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MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ.
Legland, David; Arganda-Carreras, Ignacio; Andrey, Philippe.
Affiliation
  • Legland D; UR1268 Biopolymers, Interactions and Assemblies, INRA, Nantes, France.
  • Arganda-Carreras I; Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Université Paris-Saclay, Versailles, Cedex, RD10, 78026, France.
  • Andrey P; UMR782 Food Process Engineering and Microbiology, INRA, AgroParisTech, Thiverval-Grignon, France.
Bioinformatics ; 32(22): 3532-3534, 2016 11 15.
Article in En | MEDLINE | ID: mdl-27412086
ABSTRACT
MOTIVATION Mathematical morphology (MM) provides many powerful operators for processing 2D and 3D images. However, most MM plugins currently implemented for the popular ImageJ/Fiji platform are limited to the processing of 2D images.

RESULTS:

The MorphoLibJ library proposes a large collection of generic tools based on MM to process binary and grey-level 2D and 3D images, integrated into user-friendly plugins. We illustrate how MorphoLibJ can facilitate the exploitation of 3D images of plant tissues. AVAILABILITY AND IMPLEMENTATION MorphoLibJ is freely available at http//imagej.net/MorphoLibJ CONTACT david.legland@nantes.inra.frSupplementary information Supplementary data are available at Bioinformatics online.
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Collection: 01-internacional Database: MEDLINE Main subject: Image Processing, Computer-Assisted / Software / Imaging, Three-Dimensional Language: En Journal: Bioinformatics Journal subject: INFORMATICA MEDICA Year: 2016 Document type: Article Affiliation country: France
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PubMed Links

Collection: 01-internacional Database: MEDLINE Main subject: Image Processing, Computer-Assisted / Software / Imaging, Three-Dimensional Language: En Journal: Bioinformatics Journal subject: INFORMATICA MEDICA Year: 2016 Document type: Article Affiliation country: France