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Human CCL5 trimer: expression, purification and initial crystallographic studies.
Chen, Yi Chen; Li, Kun Mou; Zarivach, Raz; Sun, Yuh Ju; Sue, Shih Che.
Affiliation
  • Chen YC; Institute of Bioinformatics and Structural Biology, National Tsing Hua University, Hsinchu 30013, Taiwan.
  • Li KM; Institute of Bioinformatics and Structural Biology, National Tsing Hua University, Hsinchu 30013, Taiwan.
  • Zarivach R; Department of Life Sciences, The National Institute for Biotechnology in the Negev and the Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev, Beer Sheva, Israel.
  • Sun YJ; Institute of Bioinformatics and Structural Biology, National Tsing Hua University, Hsinchu 30013, Taiwan.
  • Sue SC; Institute of Bioinformatics and Structural Biology, National Tsing Hua University, Hsinchu 30013, Taiwan.
Acta Crystallogr F Struct Biol Commun ; 74(Pt 2): 82-85, 2018 Feb 01.
Article in En | MEDLINE | ID: mdl-29400316
ABSTRACT
The chemokine CCL5 is considered to be a potential therapeutic target because of its ability to recruit immune cells to inflammatory sites. CCL5 aggregates under physiological conditions, and high-order oligomer formation is considered to be significant for cell migration, immune-cell activation and HIV cell entry. The structure of the high-order oligomer is unknown and the mechanism by which the oligomer is derived has yet to be established. Here, a CCL5 mutant (CCL5-E66S) which is deficient in oligomer formation was mixed with native CCL5 to prepare a protein trimer. At an optimized ratio the trimeric CCL5 crystallized, and the crystal belonged to the tetragonal space group P41212, with unit-cell parameters a = 56.6, b = 56.6, c = 154.1 Å. The Matthews coefficient (VM) of the crystal is 2.58 Å3 Da-1 (three molecules in the asymmetric unit), with a solvent content of 52.32%. Diffraction data were collected to a resolution of 1.87 Šand the statistics indicated satisfactory data quality. The new structure will reveal the interfaces in the CCL5 oligomer, therefore assisting in understanding the mechanism of CCL5 oligomerization.
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Sequence Analysis, DNA / Chemokine CCL5 / Protein Multimerization Limits: Humans Language: En Journal: Acta Crystallogr F Struct Biol Commun Year: 2018 Document type: Article Affiliation country: Taiwan

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Sequence Analysis, DNA / Chemokine CCL5 / Protein Multimerization Limits: Humans Language: En Journal: Acta Crystallogr F Struct Biol Commun Year: 2018 Document type: Article Affiliation country: Taiwan