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Microsatellite loci obtained by next generation sequencing on the sablefish (Anoplopoma fimbria).
Orozco-Ruiz, Adonaji Madeleine; Galván-Tirado, Carolina; Orlova, Svetlana Yu; Orlov, Alexei M; García-De León, Francisco Javier.
Affiliation
  • Orozco-Ruiz AM; Laboratorio de Genética para la Conservación, Centro de Investigaciones Biológicas del Noroeste (CIBNOR), Instituto Politécnico Nacional 195, Col. Playa Palo de Santa Rita, 23096, La Paz, BCS, Mexico.
  • Galván-Tirado C; Laboratorio de Genética para la Conservación, Centro de Investigaciones Biológicas del Noroeste (CIBNOR), Instituto Politécnico Nacional 195, Col. Playa Palo de Santa Rita, 23096, La Paz, BCS, Mexico.
  • Orlova SY; Russian Federal Research Institute of Fisheries and Oceanography (VNIRO), Moscow, Russia.
  • Orlov AM; Russian Federal Research Institute of Fisheries and Oceanography (VNIRO), Moscow, Russia.
  • García-De León FJ; Severtsov Institute of Ecology and Evolution of the Russian Academy of Sciences (IPEE), Moscow, Russia.
Mol Biol Rep ; 45(5): 1523-1526, 2018 Oct.
Article in En | MEDLINE | ID: mdl-29974317
Eleven microsatellite loci were developed and characterized for the sablefish, Anoplopoma fimbria. The markers were identified from sequences obtained by next generation sequencing. Thirty samples from Aleutians Islands were genotyped. The amplifications were performed with three different annealing temperature and amplification products were visualized in ABI 3500 Genetic Analyzer. No evidence for scoring errors was detected by stuttering or due large allele dropout and neither of the loci presented a high null allele frequency (> 0.2). The number means of alleles per locus was of 12.21 and mean of observed and expected heterozygosity were of 0.60 and 0.75 respectively. The sablefish represents a resource of high commercial value on the coasts of Japan, Russia, Canada and west coast of the United States and these new primers could be useful to future diversity and structure population studies.
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Perciformes / Microsatellite Repeats Type of study: Prognostic_studies Limits: Animals Language: En Journal: Mol Biol Rep Year: 2018 Document type: Article Affiliation country: Mexico Country of publication: Netherlands

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Perciformes / Microsatellite Repeats Type of study: Prognostic_studies Limits: Animals Language: En Journal: Mol Biol Rep Year: 2018 Document type: Article Affiliation country: Mexico Country of publication: Netherlands