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Anduril 2: upgraded large-scale data integration framework.
Cervera, Alejandra; Rantanen, Ville; Ovaska, Kristian; Laakso, Marko; Nuñez-Fontarnau, Javier; Alkodsi, Amjad; Casado, Julia; Facciotto, Chiara; Häkkinen, Antti; Louhimo, Riku; Karinen, Sirkku; Zhang, Kaiyang; Lavikka, Kari; Lyly, Lauri; Pal Singh, Maninder; Hautaniemi, Sampsa.
Affiliation
  • Cervera A; Research Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki.
  • Rantanen V; Research Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki.
  • Ovaska K; Research Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki.
  • Laakso M; Research Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki.
  • Nuñez-Fontarnau J; Institute for Molecular Medicine Finland, University of Helsinki, Helsinki, Finland.
  • Alkodsi A; Research Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki.
  • Casado J; Research Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki.
  • Facciotto C; Research Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki.
  • Häkkinen A; Research Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki.
  • Louhimo R; Finnish Institute of Occupational Health, Helsinki, Finland.
  • Karinen S; Research Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki.
  • Zhang K; Research Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki.
  • Lavikka K; Research Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki.
  • Lyly L; Research Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki.
  • Pal Singh M; Research Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki.
  • Hautaniemi S; Research Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki.
Bioinformatics ; 35(19): 3815-3817, 2019 10 01.
Article in En | MEDLINE | ID: mdl-30793160
ABSTRACT

SUMMARY:

Anduril is an analysis and integration framework that facilitates the design, use, parallelization and reproducibility of bioinformatics workflows. Anduril has been upgraded to use Scala for pipeline construction, which simplifies software maintenance, and facilitates design of complex pipelines. Additionally, Anduril's bioinformatics repository has been expanded with multiple components, and tutorial pipelines, for next-generation sequencing data analysis. AVAILABILITYAND IMPLEMENTATION Freely available at http//anduril.org. SUPPLEMENTARY INFORMATION Supplementary data are available at Bioinformatics online.
Subject(s)
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Software / High-Throughput Nucleotide Sequencing Type of study: Prognostic_studies Language: En Journal: Bioinformatics Journal subject: INFORMATICA MEDICA Year: 2019 Document type: Article
Fulltext
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Software / High-Throughput Nucleotide Sequencing Type of study: Prognostic_studies Language: En Journal: Bioinformatics Journal subject: INFORMATICA MEDICA Year: 2019 Document type: Article