Comparison of ultraconserved elements (UCEs) to microsatellite markers for the study of avian hybrid zones: a test in Aphelocoma jays.
BMC Res Notes
; 12(1): 456, 2019 Jul 24.
Article
in En
| MEDLINE
| ID: mdl-31340859
ABSTRACT
OBJECTIVE:
Hybrid zones are geographic regions where genetically distinct taxa interbreed, resulting in offspring of mixed ancestry. California Scrub-Jays (Aphelocoma californica) and Woodhouse's Scrub-Jays (A. woodhouseii) come into secondary contact and hybridize in western Nevada. Although previous work investigated divergence and gene flow between these species using a handful of microsatellite markers, the hybrid zone has not been studied using genome-scale markers, providing an opportunity to assess genome-wide introgression, test for a genetic basis for ecomorphological traits, and compare these estimates to those derived from microsatellites.RESULTS:
Using variant sites flanking ultraconserved elements (UCEs), we performed population assignment and quantified hybrid ancestry for 16 individuals across the zone of secondary contact. Our study included 2468 SNPs distributed throughout the genome, allowing discrimination of genetic affinities of hybrid individuals that were similar to estimates from microsatellites. We show a relationship between bill and wing length and the genetic composition of individuals that was not found in prior work using microsatellites, suggesting a genetic basis for these traits. Our analyses demonstrate the utility of UCEs for the analysis of hybrid zones and provide a basis for future studies to identify the genomic architecture of speciation and phenotypic differences between these incipient species.Key words
Full text:
1
Collection:
01-internacional
Database:
MEDLINE
Main subject:
DNA Probes
/
Genome
/
Quantitative Trait, Heritable
/
Passeriformes
/
Hybridization, Genetic
Type of study:
Prognostic_studies
Limits:
Animals
Language:
En
Journal:
BMC Res Notes
Year:
2019
Document type:
Article
Affiliation country:
United States