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Comparison of sequencing methods and data processing pipelines for whole genome sequencing and minority single nucleotide variant (mSNV) analysis during an influenza A/H5N8 outbreak.
Poen, Marjolein J; Pohlmann, Anne; Amid, Clara; Bestebroer, Theo M; Brookes, Sharon M; Brown, Ian H; Everett, Helen; Schapendonk, Claudia M E; Scheuer, Rachel D; Smits, Saskia L; Beer, Martin; Fouchier, Ron A M; Ellis, Richard J.
Affiliation
  • Poen MJ; Erasmus MC, Department of Viroscience, Rotterdam, the Netherlands.
  • Pohlmann A; Institute of Diagnostic Virology, Friedrich-Loeffler-Institute, Insel Riems, Germany.
  • Amid C; European Molecular Biology Laboratory (EMBL), European Bioinformatics Institute (EBI), Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom.
  • Bestebroer TM; Erasmus MC, Department of Viroscience, Rotterdam, the Netherlands.
  • Brookes SM; Animal and Plant Health Agency (APHA) - Weybridge, Addlestone, Surrey, United Kingdom.
  • Brown IH; Animal and Plant Health Agency (APHA) - Weybridge, Addlestone, Surrey, United Kingdom.
  • Everett H; Animal and Plant Health Agency (APHA) - Weybridge, Addlestone, Surrey, United Kingdom.
  • Schapendonk CME; Erasmus MC, Department of Viroscience, Rotterdam, the Netherlands.
  • Scheuer RD; Erasmus MC, Department of Viroscience, Rotterdam, the Netherlands.
  • Smits SL; Erasmus MC, Department of Viroscience, Rotterdam, the Netherlands.
  • Beer M; Institute of Diagnostic Virology, Friedrich-Loeffler-Institute, Insel Riems, Germany.
  • Fouchier RAM; Erasmus MC, Department of Viroscience, Rotterdam, the Netherlands.
  • Ellis RJ; Animal and Plant Health Agency (APHA) - Weybridge, Addlestone, Surrey, United Kingdom.
PLoS One ; 15(2): e0229326, 2020.
Article in En | MEDLINE | ID: mdl-32078666
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Disease Outbreaks / Orthomyxoviridae Infections / Polymorphism, Single Nucleotide / Ducks / Influenza A Virus, H5N8 Subtype / Whole Genome Sequencing Limits: Animals Language: En Journal: PLoS One Journal subject: CIENCIA / MEDICINA Year: 2020 Document type: Article Affiliation country: Netherlands
Fulltext
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Print
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Disease Outbreaks / Orthomyxoviridae Infections / Polymorphism, Single Nucleotide / Ducks / Influenza A Virus, H5N8 Subtype / Whole Genome Sequencing Limits: Animals Language: En Journal: PLoS One Journal subject: CIENCIA / MEDICINA Year: 2020 Document type: Article Affiliation country: Netherlands