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Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato.
Alonge, Michael; Wang, Xingang; Benoit, Matthias; Soyk, Sebastian; Pereira, Lara; Zhang, Lei; Suresh, Hamsini; Ramakrishnan, Srividya; Maumus, Florian; Ciren, Danielle; Levy, Yuval; Harel, Tom Hai; Shalev-Schlosser, Gili; Amsellem, Ziva; Razifard, Hamid; Caicedo, Ana L; Tieman, Denise M; Klee, Harry; Kirsche, Melanie; Aganezov, Sergey; Ranallo-Benavidez, T Rhyker; Lemmon, Zachary H; Kim, Jennifer; Robitaille, Gina; Kramer, Melissa; Goodwin, Sara; McCombie, W Richard; Hutton, Samuel; Van Eck, Joyce; Gillis, Jesse; Eshed, Yuval; Sedlazeck, Fritz J; van der Knaap, Esther; Schatz, Michael C; Lippman, Zachary B.
Affiliation
  • Alonge M; Department of Computer Science, Johns Hopkins University, Baltimore, MD 21218, USA.
  • Wang X; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
  • Benoit M; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA; Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
  • Soyk S; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
  • Pereira L; Center for Applied Genetic Technologies, Genetics & Genomics, University of Georgia, Athens, GA 30602, USA.
  • Zhang L; Center for Applied Genetic Technologies, Genetics & Genomics, University of Georgia, Athens, GA 30602, USA.
  • Suresh H; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
  • Ramakrishnan S; Department of Computer Science, Johns Hopkins University, Baltimore, MD 21218, USA.
  • Maumus F; URGI, INRA, Université Paris-Saclay, 78026 Versailles, France.
  • Ciren D; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
  • Levy Y; Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot 76100, Israel.
  • Harel TH; Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot 76100, Israel.
  • Shalev-Schlosser G; Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot 76100, Israel.
  • Amsellem Z; Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot 76100, Israel.
  • Razifard H; Institute for Applied Life Sciences, University of Massachusetts Amherst, Amherst, MA 01003, USA; Department of Biology, University of Massachusetts Amherst, Amherst, MA 01003, USA.
  • Caicedo AL; Institute for Applied Life Sciences, University of Massachusetts Amherst, Amherst, MA 01003, USA; Department of Biology, University of Massachusetts Amherst, Amherst, MA 01003, USA.
  • Tieman DM; Horticultural Sciences, Plant Innovation Center, University of Florida, Gainesville, FL 32611, USA.
  • Klee H; Horticultural Sciences, Plant Innovation Center, University of Florida, Gainesville, FL 32611, USA.
  • Kirsche M; Department of Computer Science, Johns Hopkins University, Baltimore, MD 21218, USA.
  • Aganezov S; Department of Computer Science, Johns Hopkins University, Baltimore, MD 21218, USA.
  • Ranallo-Benavidez TR; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205, USA.
  • Lemmon ZH; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
  • Kim J; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA; Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
  • Robitaille G; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA; Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
  • Kramer M; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
  • Goodwin S; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
  • McCombie WR; Stanley Institute for Cognitive Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
  • Hutton S; Gulf Coast Research and Education Center, University of Florida, Wimauma, FL 33598, USA.
  • Van Eck J; Boyce Thompson Institute, Ithaca, NY 14853, USA; Plant Breeding and Genetics Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA.
  • Gillis J; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
  • Eshed Y; Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot 76100, Israel.
  • Sedlazeck FJ; Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.
  • van der Knaap E; Center for Applied Genetic Technologies, Genetics & Genomics, University of Georgia, Athens, GA 30602, USA; Institute of Plant Breeding, Genetics and Genomics, University of Georgia, Athens, GA 30602, USA; Department of Horticulture, University of Georgia, Athens, GA 30602, USA.
  • Schatz MC; Department of Computer Science, Johns Hopkins University, Baltimore, MD 21218, USA; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA; Department of Biology, Johns Hopkins University, Baltimore, MD 21218, USA. Electronic address: mschatz@cs.jhu.edu.
  • Lippman ZB; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA; Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA. Electronic address: lippman@cshl.edu.
Cell ; 182(1): 145-161.e23, 2020 07 09.
Article in En | MEDLINE | ID: mdl-32553272
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Solanum lycopersicum / Gene Expression Regulation, Plant / Crops, Agricultural / Genomic Structural Variation Language: En Journal: Cell Year: 2020 Document type: Article Affiliation country: United States
Fulltext
Add to My VHL
Print
XML
PubMed Links
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Solanum lycopersicum / Gene Expression Regulation, Plant / Crops, Agricultural / Genomic Structural Variation Language: En Journal: Cell Year: 2020 Document type: Article Affiliation country: United States