Comparison of different variant sequence types coupled with decoy generation methods used in concatenated target-decoy database searches for proteogenomic research.

Choong, Wai-Kok; Sung, Ting-Yi

Choong, Wai-Kok; Sung, Ting-Yi.

Affiliation

Choong WK; Institute of Information Science, Academia Sinica, Nankang, Taipei 11529, Taiwan.
Sung TY; Institute of Information Science, Academia Sinica, Nankang, Taipei 11529, Taiwan. Electronic address: tsung@iis.sinica.edu.tw.

J Proteomics ; 231: 104021, 2021 01 16.

Article in En | MEDLINE | ID: mdl-33148401

Subject(s)

Proteogenomics; Algorithms; Databases, Protein; HEK293 Cells; Humans; Peptides/genetics; Proteins

Key words

Customized sequence database; Peptide identification; Proteogenomics; Single amino acid variants (SAVs); Target-decoy approach; Variant peptides

Fulltext

Add to My VHL

XML

PubMed Links

Search on Google

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Proteogenomics Limits: Humans Language: En Journal: J Proteomics Journal subject: BIOQUIMICA Year: 2021 Document type: Article Affiliation country: Taiwan Country of publication: Netherlands

Fulltext

Add to My VHL

XML

PubMed Links

Search on Google