MegaPath: sensitive and rapid pathogen detection using metagenomic NGS data.

Leung, Chi-Ming; Li, Dinghua; Xin, Yan; Law, Wai-Chun; Zhang, Yifan; Ting, Hing-Fung; Luo, Ruibang; Lam, Tak-Wah

Leung, Chi-Ming; Li, Dinghua; Xin, Yan; Law, Wai-Chun; Zhang, Yifan; Ting, Hing-Fung; Luo, Ruibang; Lam, Tak-Wah.

Affiliation

Leung CM; Department of Computer Science, The University of Hong Kong, Pokfulam Road, Hong Kong, Hong Kong. cmleung2@cs.hku.hk.
Li D; L3 Bioinformatics Limited, Rm 2114, Hong Kong Plaza, 188 Connaught Road West, Sai Ying Pun, Hong Kong. cmleung2@cs.hku.hk.
Xin Y; Department of Computer Science, The University of Hong Kong, Pokfulam Road, Hong Kong, Hong Kong.
Law WC; Department of Computer Science, The University of Hong Kong, Pokfulam Road, Hong Kong, Hong Kong.
Zhang Y; L3 Bioinformatics Limited, Rm 2114, Hong Kong Plaza, 188 Connaught Road West, Sai Ying Pun, Hong Kong.
Ting HF; L3 Bioinformatics Limited, Rm 2114, Hong Kong Plaza, 188 Connaught Road West, Sai Ying Pun, Hong Kong.
Luo R; Department of Computer Science, The University of Hong Kong, Pokfulam Road, Hong Kong, Hong Kong.
Lam TW; L3 Bioinformatics Limited, Rm 2114, Hong Kong Plaza, 188 Connaught Road West, Sai Ying Pun, Hong Kong.

BMC Genomics ; 21(Suppl 6): 500, 2020 Dec 21.

Article in En | MEDLINE | ID: mdl-33349238

Subject(s)

Metagenomics; Software; Algorithms; High-Throughput Nucleotide Sequencing; Humans; Metagenome; Sequence Alignment; Sequence Analysis, DNA

Key words

Abundance detection; Next generation sequencing; Pathogen detection; Read alignment; Shotgun metagenomic sequencing

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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Software / Metagenomics Type of study: Diagnostic_studies Limits: Humans Language: En Journal: BMC Genomics Journal subject: GENETICA Year: 2020 Document type: Article Affiliation country: Hong Kong Country of publication: United kingdom

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