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Complete Genome Sequences of 12 Quinolone-Resistant Escherichia coli Strains Containing qnrS1 Based on Hybrid Assemblies.
Kaspersen, Håkon; Haverkamp, Thomas H A; Ilag, Hanna Karin; Øines, Øivind; Sekse, Camilla; Slettemeås, Jannice Schau.
Affiliation
  • Kaspersen H; Department of Animal Health and Food Safety, Norwegian Veterinary Institute, Oslo, Norway.
  • Haverkamp THA; Department of Analysis and Diagnostics, Norwegian Veterinary Institute, Oslo, Norway.
  • Ilag HK; Department of Analysis and Diagnostics, Norwegian Veterinary Institute, Oslo, Norway.
  • Øines Ø; Department of Animal Health and Food Safety, Norwegian Veterinary Institute, Oslo, Norway.
  • Sekse C; Department of Animal Health and Food Safety, Norwegian Veterinary Institute, Oslo, Norway.
  • Slettemeås JS; Department of Animal Health and Food Safety, Norwegian Veterinary Institute, Oslo, Norway jannice.schau-slettemeas@vetinst.no.
Microbiol Resour Announc ; 10(4)2021 Jan 28.
Article in En | MEDLINE | ID: mdl-33509985
In total, 12 quinolone-resistant Escherichia coli (QREC) strains containing qnrS1 were submitted to long-read sequencing using a FLO-MIN106 flow cell on a MinION device. The long reads were assembled with short reads (Illumina) and analyzed using the MOB-suite pipeline. Six of these QREC genome sequences were closed after hybrid assembly.
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Full text: 1 Collection: 01-internacional Database: MEDLINE Language: En Journal: Microbiol Resour Announc Year: 2021 Document type: Article Affiliation country: Norway Country of publication: United States
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Full text: 1 Collection: 01-internacional Database: MEDLINE Language: En Journal: Microbiol Resour Announc Year: 2021 Document type: Article Affiliation country: Norway Country of publication: United States