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Machine learning-based real-time object locator/evaluator for cryo-EM data collection.
Yonekura, Koji; Maki-Yonekura, Saori; Naitow, Hisashi; Hamaguchi, Tasuku; Takaba, Kiyofumi.
Affiliation
  • Yonekura K; Biostructural Mechanism Laboratory, RIKEN SPring-8 Center, Sayo, Hyogo, Japan. yone@spring8.or.jp.
  • Maki-Yonekura S; Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai, Japan. yone@spring8.or.jp.
  • Naitow H; Advanced Electron Microscope Development Unit, RIKEN-JEOL Collaboration Center, RIKEN Baton Zone Program, Sayo, Hyogo, Japan. yone@spring8.or.jp.
  • Hamaguchi T; Biostructural Mechanism Laboratory, RIKEN SPring-8 Center, Sayo, Hyogo, Japan.
  • Takaba K; Biostructural Mechanism Laboratory, RIKEN SPring-8 Center, Sayo, Hyogo, Japan.
Commun Biol ; 4(1): 1044, 2021 09 07.
Article in En | MEDLINE | ID: mdl-34493805
ABSTRACT
In cryo-electron microscopy (cryo-EM) data collection, locating a target object is error-prone. Here, we present a machine learning-based approach with a real-time object locator named yoneoLocr using YOLO, a well-known object detection system. Implementation shows its effectiveness in rapidly and precisely locating carbon holes in single particle cryo-EM and in locating crystals and evaluating electron diffraction (ED) patterns in automated cryo-electron crystallography (cryo-EX) data collection. The proposed approach will advance high-throughput and accurate data collection of images and diffraction patterns with minimal human operation.
Subject(s)

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Image Processing, Computer-Assisted / Data Collection / Crystallography, X-Ray / Cryoelectron Microscopy / Machine Learning Language: En Journal: Commun Biol Year: 2021 Document type: Article Affiliation country: Japan

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Image Processing, Computer-Assisted / Data Collection / Crystallography, X-Ray / Cryoelectron Microscopy / Machine Learning Language: En Journal: Commun Biol Year: 2021 Document type: Article Affiliation country: Japan