RNALocate v2.0: an updated resource for RNA subcellular localization with increased coverage and annotation.
Nucleic Acids Res
; 50(D1): D333-D339, 2022 01 07.
Article
in En
| MEDLINE
| ID: mdl-34551440
ABSTRACT
Resolving the spatial distribution of the transcriptome at a subcellular level can increase our understanding of biology and diseases. To facilitate studies of biological functions and molecular mechanisms in the transcriptome, we updated RNALocate, a resource for RNA subcellular localization analysis that is freely accessible at http//www.rnalocate.org/ or http//www.rna-society.org/rnalocate/. Compared to RNALocate v1.0, the new features in version 2.0 include (i) expansion of the data sources and the coverage of species; (ii) incorporation and integration of RNA-seq datasets containing information about subcellular localization; (iii) addition and reorganization of RNA information (RNA subcellular localization conditions and descriptive figures for method, RNA homology information, RNA interaction and ncRNA disease information) and (iv) three additional prediction tools DM3Loc, iLoc-lncRNA and iLoc-mRNA. Overall, RNALocate v2.0 provides a comprehensive RNA subcellular localization resource for researchers to deconvolute the highly complex architecture of the cell.
Full text:
1
Collection:
01-internacional
Database:
MEDLINE
Main subject:
Software
/
RNA, Untranslated
/
Databases, Nucleic Acid
/
Transcriptome
Limits:
Animals
/
Humans
Language:
En
Journal:
Nucleic Acids Res
Year:
2022
Document type:
Article
Affiliation country:
China