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A framework for validating AI in precision medicine: considerations from the European ITFoC consortium.
Tsopra, Rosy; Fernandez, Xose; Luchinat, Claudio; Alberghina, Lilia; Lehrach, Hans; Vanoni, Marco; Dreher, Felix; Sezerman, O Ugur; Cuggia, Marc; de Tayrac, Marie; Miklasevics, Edvins; Itu, Lucian Mihai; Geanta, Marius; Ogilvie, Lesley; Godey, Florence; Boldisor, Cristian Nicolae; Campillo-Gimenez, Boris; Cioroboiu, Cosmina; Ciusdel, Costin Florian; Coman, Simona; Hijano Cubelos, Oliver; Itu, Alina; Lange, Bodo; Le Gallo, Matthieu; Lespagnol, Alexandra; Mauri, Giancarlo; Soykam, H Okan; Rance, Bastien; Turano, Paola; Tenori, Leonardo; Vignoli, Alessia; Wierling, Christoph; Benhabiles, Nora; Burgun, Anita.
Affiliation
  • Tsopra R; Centre de Recherche Des Cordeliers, Inserm, Université de Paris, Sorbonne Université, 75006, Paris, France. rosy.tsopra@nhs.net.
  • Fernandez X; Inria, HeKA, Inria Paris, France. rosy.tsopra@nhs.net.
  • Luchinat C; Department of Medical Informatics, Hôpital Européen Georges-Pompidou, AP-HP, Paris, France. rosy.tsopra@nhs.net.
  • Alberghina L; Univ Rennes, CHU Rennes, Inserm, LTSI - UMR 1099, 35000, Rennes, France. rosy.tsopra@nhs.net.
  • Lehrach H; Institut Curie, 25 Rue d'Ulm, 75005, Paris, France.
  • Vanoni M; Centro Risonanze Magnetiche - CERM/CIRMMP and Department of Chemistry, University of Florence, 50019, Sesto Fiorentino (Florence), Italy.
  • Dreher F; Department of Biotechnology and Biosciences, University of Milano Bicocca and ISBE-Italy/SYSBIO - Candidate National Node of Italy for ISBE, Research Infrastructure for Systems Biology Europe, Milan, Italy.
  • Sezerman OU; Max Planck Institute for Molecular Genetics, Berlin, Germany.
  • Cuggia M; Alacris Theranostics GmbH, Berlin, Germany.
  • de Tayrac M; Department of Biotechnology and Biosciences, University of Milano Bicocca and ISBE-Italy/SYSBIO - Candidate National Node of Italy for ISBE, Research Infrastructure for Systems Biology Europe, Milan, Italy.
  • Miklasevics E; Alacris Theranostics GmbH, Berlin, Germany.
  • Itu LM; School of Medicine Biostatistics and Medical Informatics Dept., Acibadem University, Istanbul, Turkey.
  • Geanta M; Univ Rennes, CHU Rennes, Inserm, LTSI - UMR 1099, 35000, Rennes, France.
  • Ogilvie L; Univ Rennes, Department of Molecular Genetics and Genomics, CHU Rennes, IGDR-UMR6290, CNRS, 35000, Rennes, France.
  • Godey F; RSU Institute of Oncology, Dzirciema str. 16, Riga, 1010, Latvia.
  • Boldisor CN; Transilvania University of Brasov, Brasov, Romania.
  • Campillo-Gimenez B; Centre for Innovation in Medicine, Bucharest, Romania.
  • Cioroboiu C; Max Planck Institute for Molecular Genetics, Berlin, Germany.
  • Ciusdel CF; Alacris Theranostics GmbH, Berlin, Germany.
  • Coman S; INSERM U1242 « Chemistry, Oncogenesis Stress Signaling ¼, Université de Rennes, 35042, CEDEX, Rennes, France.
  • Hijano Cubelos O; Centre de Lutte Contre Le Cancer Eugène Marquis, CRB Santé (BRIF Number: BB-0033-00056), 35042, CEDEX, Rennes, France.
  • Itu A; Transilvania University of Brasov, Brasov, Romania.
  • Lange B; Univ Rennes, CLCC Eugène Marquis, INSERM, LTSI - UMR 1099, 35000, Rennes, France.
  • Le Gallo M; Centre for Innovation in Medicine, Bucharest, Romania.
  • Lespagnol A; Transilvania University of Brasov, Brasov, Romania.
  • Mauri G; Transilvania University of Brasov, Brasov, Romania.
  • Soykam HO; Institut Curie, 25 Rue d'Ulm, 75005, Paris, France.
  • Rance B; Transilvania University of Brasov, Brasov, Romania.
  • Turano P; Alacris Theranostics GmbH, Berlin, Germany.
  • Tenori L; INSERM U1242 « Chemistry, Oncogenesis Stress Signaling ¼, Université de Rennes, 35042, CEDEX, Rennes, France.
  • Vignoli A; Centre de Lutte Contre Le Cancer Eugène Marquis, CRB Santé (BRIF Number: BB-0033-00056), 35042, CEDEX, Rennes, France.
  • Wierling C; Department of Molecular Genetics and Genomics, CHU Rennes, 35000, Rennes, France.
  • Benhabiles N; Department of Informatics, Systems and Communication, University of Milano Bicocca and ISBE-Italy/SYSBIO - Candidate National Node of Italy for ISBE, Research Infrastructure for Systems Biology Europe, Milan, Italy.
  • Burgun A; EPIGENETICS Inc. BUDOTEK, Istanbul, Turkey.
BMC Med Inform Decis Mak ; 21(1): 274, 2021 10 02.
Article in En | MEDLINE | ID: mdl-34600518
ABSTRACT

BACKGROUND:

Artificial intelligence (AI) has the potential to transform our healthcare systems significantly. New AI technologies based on machine learning approaches should play a key role in clinical decision-making in the future. However, their implementation in health care settings remains limited, mostly due to a lack of robust validation procedures. There is a need to develop reliable assessment frameworks for the clinical validation of AI. We present here an approach for assessing AI for predicting treatment response in triple-negative breast cancer (TNBC), using real-world data and molecular -omics data from clinical data warehouses and biobanks.

METHODS:

The European "ITFoC (Information Technology for the Future Of Cancer)" consortium designed a framework for the clinical validation of AI technologies for predicting treatment response in oncology.

RESULTS:

This framework is based on seven key steps specifying (1) the intended use of AI, (2) the target population, (3) the timing of AI evaluation, (4) the datasets used for evaluation, (5) the procedures used for ensuring data safety (including data quality, privacy and security), (6) the metrics used for measuring performance, and (7) the procedures used to ensure that the AI is explainable. This framework forms the basis of a validation platform that we are building for the "ITFoC Challenge". This community-wide competition will make it possible to assess and compare AI algorithms for predicting the response to TNBC treatments with external real-world datasets.

CONCLUSIONS:

The predictive performance and safety of AI technologies must be assessed in a robust, unbiased and transparent manner before their implementation in healthcare settings. We believe that the consideration of the ITFoC consortium will contribute to the safe transfer and implementation of AI in clinical settings, in the context of precision oncology and personalized care.
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Artificial Intelligence / Neoplasms Type of study: Prognostic_studies Limits: Humans Language: En Journal: BMC Med Inform Decis Mak Journal subject: INFORMATICA MEDICA Year: 2021 Document type: Article Affiliation country: France

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Artificial Intelligence / Neoplasms Type of study: Prognostic_studies Limits: Humans Language: En Journal: BMC Med Inform Decis Mak Journal subject: INFORMATICA MEDICA Year: 2021 Document type: Article Affiliation country: France