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A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa.
Wilkinson, Eduan; Giovanetti, Marta; Tegally, Houriiyah; San, James E; Lessells, Richard; Cuadros, Diego; Martin, Darren P; Rasmussen, David A; Zekri, Abdel-Rahman N; Sangare, Abdoul K; Ouedraogo, Abdoul-Salam; Sesay, Abdul K; Priscilla, Abechi; Kemi, Adedotun-Sulaiman; Olubusuyi, Adewunmi M; Oluwapelumi, Adeyemi O O; Hammami, Adnène; Amuri, Adrienne A; Sayed, Ahmad; Ouma, Ahmed E O; Elargoubi, Aida; Ajayi, Nnennaya A; Victoria, Ajogbasile F; Kazeem, Akano; George, Akpede; Trotter, Alexander J; Yahaya, Ali A; Keita, Alpha K; Diallo, Amadou; Kone, Amadou; Souissi, Amal; Chtourou, Amel; Gutierrez, Ana V; Page, Andrew J; Vinze, Anika; Iranzadeh, Arash; Lambisia, Arnold; Ismail, Arshad; Rosemary, Audu; Sylverken, Augustina; Femi, Ayoade; Ibrahimi, Azeddine; Marycelin, Baba; Oderinde, Bamidele S; Bolajoko, Bankole; Dhaala, Beatrice; Herring, Belinda L; Njanpop-Lafourcade, Berthe-Marie; Kleinhans, Bronwyn; McInnis, Bronwyn.
Affiliation
  • Wilkinson E; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa.
  • Giovanetti M; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.
  • Tegally H; Laboratorio de Flavivirus, Fundacao Oswaldo Cruz, Rio de Janeiro, Brazil.
  • San JE; Laboratório de Genética Celular e Molecular, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.
  • Lessells R; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa.
  • Cuadros D; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa.
  • Martin DP; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa.
  • Rasmussen DA; Department of Geography and GIS, University of Cincinnati, Cincinnati, OH, USA.
  • Zekri AN; Institute of Infectious Diseases and Molecular Medicine, Department of Integrative Biomedical Sciences, Computational Biology Division, University of Cape Town, Cape Town, South Africa.
  • Sangare AK; Division of Medical Virology, Wellcome Centre for Infectious Diseases in Africa, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa.
  • Ouedraogo AS; Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC, USA.
  • Sesay AK; Bioinformatics Research Center, North Carolina State University, Raleigh, NC, USA.
  • Priscilla A; Cancer Biology Department, Virology and Immunology Unit, National Cancer Institute, Cairo University, Cairo 11796, Egypt.
  • Kemi AS; Centre d'Infectiologie Charles Mérieux-Mali (CICM-Mali), Bamako, Mali.
  • Olubusuyi AM; Bacteriology and Virology Department Souro Sanou University Hospital, Bobo-Dioulasso, Burkina Faso.
  • Oluwapelumi AOO; MRCG at LSHTM Genomics Lab, Fajara, Gambia.
  • Hammami A; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria.
  • Amuri AA; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria.
  • Sayed A; Department of Virology, College of Medicine, University of Ibadan, Ibadan, Nigeria.
  • Ouma AEO; Department of Medical Microbiology and Parasitology, Faculty of Basic Clinical Sciences, College of Health Sciences, University of Ilorin, Ilorin, Kwara State, Nigeria.
  • Elargoubi A; CHU Habib Bourguiba, Laboratory of Microbiology, Faculty of Medicine of sFax, University of sFax, sFax, Tunisia.
  • Ajayi NA; Pathogen Sequencing Lab, Institut National de Recherche Biomédicale (INRB), Kinshasa, Democratic Republic of the Congo.
  • Victoria AF; Université de Kinshasa (UNIKIN), Kinshasa, Democratic Republic of the Congo.
  • Kazeem A; Genomics Research Program, Children's Cancer Hospital, Cairo, Egypt.
  • George A; Institute of Pathogen Genomics, Africa Centres for Disease Control and Prevention (Africa CDC), Addis Ababa, Ethiopia.
  • Trotter AJ; Laboratory of Transmissible Diseases and Biological Active Substances (LR99ES27), Faculty of Pharmacy of Monastir, Monastir, Tunisia.
  • Yahaya AA; Laboratory of Microbiology, University Hospital of Monastir, Monastir, Tunisia.
  • Keita AK; Internal Medicine Department, Alex Ekwueme Federal University Teaching Hospital, Abakaliki, Nigeria.
  • Diallo A; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria.
  • Kone A; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria.
  • Souissi A; Irrua Specialist Teaching Hospital, Irrua, Nigeria.
  • Chtourou A; Quadram Institute Bioscience, Norwich, UK.
  • Gutierrez AV; World Health Organization, Africa Region, Brazzaville Congo.
  • Page AJ; Centre de Recherche et de Formation en Infectiologie de Guinée (CERFIG), Université de Conakry, Conakry, Guinea.
  • Vinze A; TransVIHMI, Montpellier University/IRD/INSERM, Montpellier, France.
  • Iranzadeh A; Virology Department, Institut Pasteur de Dakar, Dakar, Senegal.
  • Lambisia A; Mali-University Clinical Research Center (UCRC), Bamako, Mali.
  • Ismail A; Laboratory of Molecular and Cellular Screening Processes, Centre of Biotechnology of Sfax, University of Sfax, Sfax, Tunisia.
  • Rosemary A; CHU Habib Bourguiba, Laboratory of Microbiology, Faculty of Medicine of sFax, University of sFax, sFax, Tunisia.
  • Sylverken A; Quadram Institute Bioscience, Norwich, UK.
  • Femi A; Quadram Institute Bioscience, Norwich, UK.
  • Ibrahimi A; Broad Insitute of Harvard and MIT, Cambridge, MA, USA.
  • Marycelin B; Institute of Infectious Diseases and Molecular Medicine, Department of Integrative Biomedical Sciences, Computational Biology Division, University of Cape Town, Cape Town, South Africa.
  • Oderinde BS; Division of Medical Virology, Wellcome Centre for Infectious Diseases in Africa, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa.
  • Bolajoko B; KEMRI-Wellcome Trust Research Programme/KEMRI-CGMR-C, Kilifi, Kenya.
  • Dhaala B; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), Johannesburg, South Africa.
  • Herring BL; The Nigerian Institute of Medical Research, Yaba, Lagos, Nigeria.
  • Njanpop-Lafourcade BM; Institute of Virology, Charité - Universitätsmedizin, Berlin, Germany.
  • Kleinhans B; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria.
  • McInnis B; Medical Biotechnology Laboratory, Rabat Medical and Pharmacy School, Mohammed V University, Rabat, Morocco.
Science ; 374(6566): 423-431, 2021 Oct 22.
Article in En | MEDLINE | ID: mdl-34672751
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Genomics / Pandemics / Epidemiological Monitoring / SARS-CoV-2 / COVID-19 Type of study: Screening_studies Limits: Humans Country/Region as subject: Africa Language: En Journal: Science Year: 2021 Document type: Article Affiliation country: South Africa Country of publication: United States
Fulltext
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Genomics / Pandemics / Epidemiological Monitoring / SARS-CoV-2 / COVID-19 Type of study: Screening_studies Limits: Humans Country/Region as subject: Africa Language: En Journal: Science Year: 2021 Document type: Article Affiliation country: South Africa Country of publication: United States