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Knowledge transfer to enhance the performance of deep learning models for automated classification of B cell neoplasms.
Mallesh, Nanditha; Zhao, Max; Meintker, Lisa; Höllein, Alexander; Elsner, Franz; Lüling, Hannes; Haferlach, Torsten; Kern, Wolfgang; Westermann, Jörg; Brossart, Peter; Krause, Stefan W; Krawitz, Peter M.
Affiliation
  • Mallesh N; Institute for Genomic Statistics and Bioinformatics, University Bonn, Bonn, Germany.
  • Zhao M; Institute for Genomic Statistics and Bioinformatics, University Bonn, Bonn, Germany.
  • Meintker L; Institute of Human Genetics and Medical Genetics, Charité University Hospital, Berlin, Germany.
  • Höllein A; Department of Medicine 5, Universitätsklinikum Erlangen, Erlangen, Germany.
  • Elsner F; MLL Munich Leukemia Laboratory, Munich, Germany.
  • Lüling H; Red Cross Hospital Munich, Munich, Germany.
  • Haferlach T; res mechanica GmbH, Munich, Germany.
  • Kern W; res mechanica GmbH, Munich, Germany.
  • Westermann J; MLL Munich Leukemia Laboratory, Munich, Germany.
  • Brossart P; MLL Munich Leukemia Laboratory, Munich, Germany.
  • Krause SW; Department of Hematology, Oncology and Tumor Immunology, Charité-Campus Virchow Clinic and Labor Berlin Charité Vivantes, Berlin, Germany.
  • Krawitz PM; Department of Oncology, Hematology, Immuno-oncology and Rheumatology, University Hospital of Bonn, Bonn, Germany.
Patterns (N Y) ; 2(10): 100351, 2021 Oct 08.
Article in En | MEDLINE | ID: mdl-34693376
Multi-parameter flow cytometry (MFC) is a cornerstone in clinical decision making for leukemia and lymphoma. MFC data analysis requires manual gating of cell populations, which is time-consuming, subjective, and often limited to a two-dimensional space. In recent years, deep learning models have been successfully used to analyze data in high-dimensional space and are highly accurate. However, AI models used for disease classification with MFC data are limited to the panel they were trained on. Thus, a key challenge in deploying AI into routine diagnostics is the robustness and adaptability of such models. This study demonstrates how transfer learning can be applied to boost the performance of models with smaller datasets acquired with different MFC panels. We trained models for four additional datasets by transferring the features learned from our base model. Our workflow increased the model's overall performance and, more prominently, improved the learning rate for small training sizes.
Key words

Full text: 1 Collection: 01-internacional Database: MEDLINE Type of study: Guideline / Prognostic_studies Language: En Journal: Patterns (N Y) Year: 2021 Document type: Article Affiliation country: Germany Country of publication: United States

Full text: 1 Collection: 01-internacional Database: MEDLINE Type of study: Guideline / Prognostic_studies Language: En Journal: Patterns (N Y) Year: 2021 Document type: Article Affiliation country: Germany Country of publication: United States