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Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram.
Biancalani, Tommaso; Scalia, Gabriele; Buffoni, Lorenzo; Avasthi, Raghav; Lu, Ziqing; Sanger, Aman; Tokcan, Neriman; Vanderburg, Charles R; Segerstolpe, Åsa; Zhang, Meng; Avraham-Davidi, Inbal; Vickovic, Sanja; Nitzan, Mor; Ma, Sai; Subramanian, Ayshwarya; Lipinski, Michal; Buenrostro, Jason; Brown, Nik Bear; Fanelli, Duccio; Zhuang, Xiaowei; Macosko, Evan Z; Regev, Aviv.
Affiliation
  • Biancalani T; Broad Institute of MIT and Harvard, Cambridge, MA, USA. tommaso.biancalani@gmail.com.
  • Scalia G; Genentech, South San Francisco, CA, USA. tommaso.biancalani@gmail.com.
  • Buffoni L; Broad Institute of MIT and Harvard, Cambridge, MA, USA.
  • Avasthi R; Roche, Monza, Italy.
  • Lu Z; Department of Physics and Astrophysics, University of Florence, Florence, Italy.
  • Sanger A; Broad Institute of MIT and Harvard, Cambridge, MA, USA.
  • Tokcan N; Northeastern University, Boston, MA, USA.
  • Vanderburg CR; Broad Institute of MIT and Harvard, Cambridge, MA, USA.
  • Segerstolpe Å; Northeastern University, Boston, MA, USA.
  • Zhang M; Broad Institute of MIT and Harvard, Cambridge, MA, USA.
  • Avraham-Davidi I; Broad Institute of MIT and Harvard, Cambridge, MA, USA.
  • Vickovic S; Broad Institute of MIT and Harvard, Cambridge, MA, USA.
  • Nitzan M; Broad Institute of MIT and Harvard, Cambridge, MA, USA.
  • Ma S; Department of Chemistry and Chemical Biology, Department of Physics, Harvard University, Cambridge, MA, USA.
  • Subramanian A; Howard Hughes Medical Institute, Chevy Chase, MD, USA.
  • Lipinski M; Broad Institute of MIT and Harvard, Cambridge, MA, USA.
  • Buenrostro J; Broad Institute of MIT and Harvard, Cambridge, MA, USA.
  • Brown NB; Broad Institute of MIT and Harvard, Cambridge, MA, USA.
  • Fanelli D; School of Engineering and Applied Sciences, Harvard University, Cambridge, MA, USA.
  • Zhuang X; School of Computer Science and Engineering, Racah Institute of Physics, Faculty of Medicine, The Hebrew University, Jerusalem, Israel.
  • Macosko EZ; Broad Institute of MIT and Harvard, Cambridge, MA, USA.
  • Regev A; Department of Biology, MIT, Cambridge, MA, USA.
Nat Methods ; 18(11): 1352-1362, 2021 11.
Article in En | MEDLINE | ID: mdl-34711971
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Software / Brain / Chromatin / Gene Expression Regulation / Single-Cell Analysis / Transcriptome / Deep Learning Limits: Animals Language: En Journal: Nat Methods Journal subject: TECNICAS E PROCEDIMENTOS DE LABORATORIO Year: 2021 Document type: Article Affiliation country: United States Country of publication: United States
Fulltext
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Software / Brain / Chromatin / Gene Expression Regulation / Single-Cell Analysis / Transcriptome / Deep Learning Limits: Animals Language: En Journal: Nat Methods Journal subject: TECNICAS E PROCEDIMENTOS DE LABORATORIO Year: 2021 Document type: Article Affiliation country: United States Country of publication: United States