Your browser doesn't support javascript.
loading
Brain simulation as a cloud service: The Virtual Brain on EBRAINS.
Schirner, Michael; Domide, Lia; Perdikis, Dionysios; Triebkorn, Paul; Stefanovski, Leon; Pai, Roopa; Prodan, Paula; Valean, Bogdan; Palmer, Jessica; Langford, Chloê; Blickensdörfer, André; van der Vlag, Michiel; Diaz-Pier, Sandra; Peyser, Alexander; Klijn, Wouter; Pleiter, Dirk; Nahm, Anne; Schmid, Oliver; Woodman, Marmaduke; Zehl, Lyuba; Fousek, Jan; Petkoski, Spase; Kusch, Lionel; Hashemi, Meysam; Marinazzo, Daniele; Mangin, Jean-François; Flöel, Agnes; Akintoye, Simisola; Stahl, Bernd Carsten; Cepic, Michael; Johnson, Emily; Deco, Gustavo; McIntosh, Anthony R; Hilgetag, Claus C; Morgan, Marc; Schuller, Bernd; Upton, Alex; McMurtrie, Colin; Dickscheid, Timo; Bjaalie, Jan G; Amunts, Katrin; Mersmann, Jochen; Jirsa, Viktor; Ritter, Petra.
Affiliation
  • Schirner M; Berlin Institute of Health at Charité, Universitätsmedizin Berlin, Charitéplatz 1, 10117 Berlin, Germany; Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, Department of Neurology with Experimental Neurology, Charitéplatz 1, 10117 Be
  • Domide L; Codemart, Str. Petofi Sandor, Cluj, Napoca, Romania.
  • Perdikis D; Berlin Institute of Health at Charité, Universitätsmedizin Berlin, Charitéplatz 1, 10117 Berlin, Germany; Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, Department of Neurology with Experimental Neurology, Charitéplatz 1, 10117 Be
  • Triebkorn P; Berlin Institute of Health at Charité, Universitätsmedizin Berlin, Charitéplatz 1, 10117 Berlin, Germany; Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, Department of Neurology with Experimental Neurology, Charitéplatz 1, 10117 Be
  • Stefanovski L; Berlin Institute of Health at Charité, Universitätsmedizin Berlin, Charitéplatz 1, 10117 Berlin, Germany; Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, Department of Neurology with Experimental Neurology, Charitéplatz 1, 10117 Be
  • Pai R; Berlin Institute of Health at Charité, Universitätsmedizin Berlin, Charitéplatz 1, 10117 Berlin, Germany; Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, Department of Neurology with Experimental Neurology, Charitéplatz 1, 10117 Be
  • Prodan P; Codemart, Str. Petofi Sandor, Cluj, Napoca, Romania.
  • Valean B; Codemart, Str. Petofi Sandor, Cluj, Napoca, Romania.
  • Palmer J; Berlin Institute of Health at Charité, Universitätsmedizin Berlin, Charitéplatz 1, 10117 Berlin, Germany; Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, Department of Neurology with Experimental Neurology, Charitéplatz 1, 10117 Be
  • Langford C; Berlin Institute of Health at Charité, Universitätsmedizin Berlin, Charitéplatz 1, 10117 Berlin, Germany; Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, Department of Neurology with Experimental Neurology, Charitéplatz 1, 10117 Be
  • Blickensdörfer A; Berlin Institute of Health at Charité, Universitätsmedizin Berlin, Charitéplatz 1, 10117 Berlin, Germany; Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, Department of Neurology with Experimental Neurology, Charitéplatz 1, 10117 Be
  • van der Vlag M; SimLab Neuroscience, Jülich Supercomputing Centre (JSC), Institute for Advanced Simulation, JARA, Forschungszentrum Jülich GmbH, Jülich, Germany.
  • Diaz-Pier S; SimLab Neuroscience, Jülich Supercomputing Centre (JSC), Institute for Advanced Simulation, JARA, Forschungszentrum Jülich GmbH, Jülich, Germany.
  • Peyser A; SimLab Neuroscience, Jülich Supercomputing Centre (JSC), Institute for Advanced Simulation, JARA, Forschungszentrum Jülich GmbH, Jülich, Germany.
  • Klijn W; SimLab Neuroscience, Jülich Supercomputing Centre (JSC), Institute for Advanced Simulation, JARA, Forschungszentrum Jülich GmbH, Jülich, Germany.
  • Pleiter D; Jülich Supercomputer Centre, Forschungszentrum Jülich, Jülich, Germany; Institut für Theoretische Physik, Universität Regensburg, Regensburg, Germany.
  • Nahm A; Jülich Supercomputer Centre, Forschungszentrum Jülich, Jülich, Germany.
  • Schmid O; Swiss Federal Institute of Technology Lausanne (EPFL), Campus Biotech, Geneva, Switzerland.
  • Woodman M; Institut de Neurosciences des Systèmes, Aix Marseille Université, Marseille, France.
  • Zehl L; Institute of Neuroscience and Medicine (INM-1), Research Centre Jülich, Jülich, Germany.
  • Fousek J; Institut de Neurosciences des Systèmes, Aix Marseille Université, Marseille, France.
  • Petkoski S; Institut de Neurosciences des Systèmes, Aix Marseille Université, Marseille, France.
  • Kusch L; Institut de Neurosciences des Systèmes, Aix Marseille Université, Marseille, France.
  • Hashemi M; Institut de Neurosciences des Systèmes, Aix Marseille Université, Marseille, France.
  • Marinazzo D; Department of Data-Analysis, Faculty of Psychology and Educational Sciences, Ghent University, Belgium; San Camillo IRCSS, Venice, Italy.
  • Mangin JF; Université Paris-Saclay, CEA, CNRS, Neurospin, Baobab, Gif-sur-Yvette, France.
  • Flöel A; Department of Neurology, University Medicine Greifswald, Greifswald, Germany; German Center for Neurodegenerative Diseases (DZNE) Standort Greifswald, Greifswald, Germany.
  • Akintoye S; Leicester De Montfort Law School, De Montfort University, Leicester, United Kingdom.
  • Stahl BC; Centre for Computing and Social Responsibility, De Montfort University, Leicester, United Kingdom.
  • Cepic M; Department of Innovation and Digitalisation in Law, Faculty of Law, University of Vienna, Austria.
  • Johnson E; Department of Innovation and Digitalisation in Law, Faculty of Law, University of Vienna, Austria.
  • Deco G; Center for Brain and Cognition, Computational Neuroscience Group, Department of Information and Communication Technologies, Universitat Pompeu Fabra, Barcelona, Spain; Institució Catalana de la Recerca i Estudis Avançats, Barcelona, Spain; Department of Neuropsychology, Max Planck Institute for Huma
  • McIntosh AR; Baycrest Health Sciences, Rotman Research Institute, Toronto, ON, Canada.
  • Hilgetag CC; Institute of Computational Neuroscience, University Medical Center Hamburg-Eppendorf, Hamburg, Germany; Department of Health Sciences, Boston University, 635 Commonwealth Ave., Boston, Massachusetts 02215, United States.
  • Morgan M; Swiss Federal Institute of Technology Lausanne (EPFL), Campus Biotech, Geneva, Switzerland.
  • Schuller B; Jülich Supercomputer Centre, Forschungszentrum Jülich, Jülich, Germany.
  • Upton A; CSCS Swiss National Supercomputing Centre, Lugano, Switzerland.
  • McMurtrie C; CSCS Swiss National Supercomputing Centre, Lugano, Switzerland.
  • Dickscheid T; Institute of Neuroscience and Medicine (INM-1), Research Centre Jülich, Jülich, Germany.
  • Bjaalie JG; Institute of Basic Medical Sciences, University of Oslo, Norway.
  • Amunts K; Institute of Neuroscience and Medicine (INM-1), Research Centre Jülich, Jülich, Germany; C. and O. Vogt Institute for Brain Research, University Hospital Düsseldorf, Heinrich-Heine University Düsseldorf, Germany.
  • Mersmann J; CodeBox GmbH, Stuttgart, Germany.
  • Jirsa V; Institut de Neurosciences des Systèmes, Aix Marseille Université, Marseille, France.
  • Ritter P; Berlin Institute of Health at Charité, Universitätsmedizin Berlin, Charitéplatz 1, 10117 Berlin, Germany; Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, Department of Neurology with Experimental Neurology, Charitéplatz 1, 10117 Be
Neuroimage ; 251: 118973, 2022 05 01.
Article in En | MEDLINE | ID: mdl-35131433
ABSTRACT
The Virtual Brain (TVB) is now available as open-source services on the cloud research platform EBRAINS (ebrains.eu). It offers software for constructing, simulating and analysing brain network models including the TVB simulator; magnetic resonance imaging (MRI) processing pipelines to extract structural and functional brain networks; combined simulation of large-scale brain networks with small-scale spiking networks; automatic conversion of user-specified model equations into fast simulation code; simulation-ready brain models of patients and healthy volunteers; Bayesian parameter optimization in epilepsy patient models; data and software for mouse brain simulation; and extensive educational material. TVB cloud services facilitate reproducible online collaboration and discovery of data assets, models, and software embedded in scalable and secure workflows, a precondition for research on large cohort data sets, better generalizability, and clinical translation.
Subject(s)
Key words
Fulltext
Add to My VHL
Print
XML
PubMed Links
Search on Google

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Brain / Cloud Computing Type of study: Prognostic_studies Limits: Animals / Humans Language: En Journal: Neuroimage Journal subject: DIAGNOSTICO POR IMAGEM Year: 2022 Document type: Article
Fulltext
Add to My VHL
Print
XML
PubMed Links
Search on Google

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Brain / Cloud Computing Type of study: Prognostic_studies Limits: Animals / Humans Language: En Journal: Neuroimage Journal subject: DIAGNOSTICO POR IMAGEM Year: 2022 Document type: Article