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Importance of rigidity of ice-binding protein (FfIBP) for hyperthermal hysteresis activity and microbial survival.
Hwang, Jisub; Kim, Bomi; Lee, Min Ju; Kim, Eun Jae; Cho, Sung Mi; Lee, Sung Gu; Han, Se Jong; Kim, Kitae; Lee, Jun Hyuck; Do, Hackwon.
Affiliation
  • Hwang J; Research Unit of Cryogenic Novel Material, Korea Polar Research Institute, Incheon 21990, Republic of Korea; Department of Polar Sciences, University of Science and Technology, Incheon 21990, Republic of Korea.
  • Kim B; Research Unit of Cryogenic Novel Material, Korea Polar Research Institute, Incheon 21990, Republic of Korea; Department of Polar Sciences, University of Science and Technology, Incheon 21990, Republic of Korea.
  • Lee MJ; Research Unit of Cryogenic Novel Material, Korea Polar Research Institute, Incheon 21990, Republic of Korea.
  • Kim EJ; Division of Life Sciences, Korea Polar Research Institute, Incheon 21990, Republic of Korea.
  • Cho SM; Division of Life Sciences, Korea Polar Research Institute, Incheon 21990, Republic of Korea.
  • Lee SG; Research Unit of Cryogenic Novel Material, Korea Polar Research Institute, Incheon 21990, Republic of Korea; Department of Polar Sciences, University of Science and Technology, Incheon 21990, Republic of Korea.
  • Han SJ; Department of Polar Sciences, University of Science and Technology, Incheon 21990, Republic of Korea; Division of Life Sciences, Korea Polar Research Institute, Incheon 21990, Republic of Korea.
  • Kim K; Research Unit of Cryogenic Novel Material, Korea Polar Research Institute, Incheon 21990, Republic of Korea; Department of Polar Sciences, University of Science and Technology, Incheon 21990, Republic of Korea. Electronic address: ktkim@kopri.re.kr.
  • Lee JH; Research Unit of Cryogenic Novel Material, Korea Polar Research Institute, Incheon 21990, Republic of Korea; Department of Polar Sciences, University of Science and Technology, Incheon 21990, Republic of Korea. Electronic address: junhyucklee@kopri.re.kr.
  • Do H; Research Unit of Cryogenic Novel Material, Korea Polar Research Institute, Incheon 21990, Republic of Korea; Department of Polar Sciences, University of Science and Technology, Incheon 21990, Republic of Korea. Electronic address: hackwondo@kopri.re.kr.
Int J Biol Macromol ; 204: 485-499, 2022 Apr 15.
Article in En | MEDLINE | ID: mdl-35149098
ABSTRACT
Ice-binding proteins (IBPs) are well-characterized proteins responsible for the cold-adaptation mechanisms. Despite extensive structural and biological investigation of IBPs and antifreeze proteins, only a few studies have considered the relationship between protein stabilization and thermal hysteresis (TH) activity as well as the implication of hyperactivity. Here, we investigated the important role of the head capping region in stabilization and the hyper-TH activity of FfIBP using molecular dynamics simulation. Data comparison revealed that residues on the ice-binding site of the hyperactive FfIBP are immobilized, which could be correlated with TH activity. Further comparison analysis indicated the disulfide bond in the head region is mainly involved in protein stabilization and is crucial for hyper-TH activity. This finding could also be generalized to known hyperactive IBPs. Furthermore, in mimicking the physiological conditions, bacteria with membrane-anchored FfIBP formed brine pockets in a TH activity-dependent manner. Cells with a higher number of TH-active IBPs showed an increased number of brine pockets, which may be beneficial for short- and long-term survival in cold environments by reducing the salt concentration. The newly identified conditions for hyper-TH activity and their implications on bacterial survival provide insights into novel mechanistic aspects of cold adaptation in polar microorganisms.
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Carrier Proteins / Ice Type of study: Prognostic_studies Language: En Journal: Int J Biol Macromol Year: 2022 Document type: Article

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Carrier Proteins / Ice Type of study: Prognostic_studies Language: En Journal: Int J Biol Macromol Year: 2022 Document type: Article