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Comparison and aggregation of event sequences across ten cohorts to describe the consensus biomarker evolution in Alzheimer's disease.
Golriz Khatami, Sepehr; Salimi, Yasamin; Hofmann-Apitius, Martin; Oxtoby, Neil P; Birkenbihl, Colin.
Affiliation
  • Golriz Khatami S; Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), 53757, Sankt Augustin, Germany. sepehr.golriz.khatami@scai.fraunhofer.de.
  • Salimi Y; Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, 53115, Bonn, Germany. sepehr.golriz.khatami@scai.fraunhofer.de.
  • Hofmann-Apitius M; Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), 53757, Sankt Augustin, Germany.
  • Oxtoby NP; Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, 53115, Bonn, Germany.
  • Birkenbihl C; Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), 53757, Sankt Augustin, Germany.
Alzheimers Res Ther ; 14(1): 55, 2022 04 20.
Article in En | MEDLINE | ID: mdl-35443691
ABSTRACT

BACKGROUND:

Previous models of Alzheimer's disease (AD) progression were primarily hypothetical or based on data originating from single cohort studies. However, cohort datasets are subject to specific inclusion and exclusion criteria that influence the signals observed in their collected data. Furthermore, each study measures only a subset of AD-relevant variables. To gain a comprehensive understanding of AD progression, the heterogeneity and robustness of estimated progression patterns must be understood, and complementary information contained in cohort datasets be leveraged.

METHODS:

We compared ten event-based models that we fit to ten independent AD cohort datasets. Additionally, we designed and applied a novel rank aggregation algorithm that combines partially overlapping, individual event sequences into a meta-sequence containing the complementary information from each cohort.

RESULTS:

We observed overall consistency across the ten event-based model sequences (average pairwise Kendall's tau correlation coefficient of 0.69 ± 0.28), despite variance in the positioning of mainly imaging variables. The changes described in the aggregated meta-sequence are broadly consistent with the current understanding of AD progression, starting with cerebrospinal fluid amyloid beta, followed by tauopathy, memory impairment, FDG-PET, and ultimately brain deterioration and impairment of visual memory.

CONCLUSION:

Overall, the event-based models demonstrated similar and robust disease cascades across independent AD cohorts. Aggregation of data-driven results can combine complementary strengths and information of patient-level datasets. Accordingly, the derived meta-sequence draws a more complete picture of AD pathology compared to models relying on single cohorts.
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Alzheimer Disease Type of study: Guideline / Observational_studies / Prognostic_studies Limits: Humans Language: En Journal: Alzheimers Res Ther Year: 2022 Document type: Article Affiliation country: Germany Publication country: ENGLAND / ESCOCIA / GB / GREAT BRITAIN / INGLATERRA / REINO UNIDO / SCOTLAND / UK / UNITED KINGDOM

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Alzheimer Disease Type of study: Guideline / Observational_studies / Prognostic_studies Limits: Humans Language: En Journal: Alzheimers Res Ther Year: 2022 Document type: Article Affiliation country: Germany Publication country: ENGLAND / ESCOCIA / GB / GREAT BRITAIN / INGLATERRA / REINO UNIDO / SCOTLAND / UK / UNITED KINGDOM