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PP2A is activated by cytochrome c upon formation of a diffuse encounter complex with SET/TAF-Iß.
Casado-Combreras, Miguel Á; Rivero-Rodríguez, Francisco; Elena-Real, Carlos A; Molodenskiy, Dmitry; Díaz-Quintana, Antonio; Martinho, Marlène; Gerbaud, Guillaume; González-Arzola, Katiuska; Velázquez-Campoy, Adrián; Svergun, Dmitri; Belle, Valérie; De la Rosa, Miguel A; Díaz-Moreno, Irene.
Affiliation
  • Casado-Combreras MÁ; Institute for Chemical Research (IIQ), Scientific Research Centre "Isla de la Cartuja" (cicCartuja), University of Seville and CSIC, Avda. Américo Vespucio, 49, 41092 Seville, Spain.
  • Rivero-Rodríguez F; Institute for Chemical Research (IIQ), Scientific Research Centre "Isla de la Cartuja" (cicCartuja), University of Seville and CSIC, Avda. Américo Vespucio, 49, 41092 Seville, Spain.
  • Elena-Real CA; Institute for Chemical Research (IIQ), Scientific Research Centre "Isla de la Cartuja" (cicCartuja), University of Seville and CSIC, Avda. Américo Vespucio, 49, 41092 Seville, Spain.
  • Molodenskiy D; Centre de Biologie Structurale (CBS), INSERM, Centre National de la Recherche Scientifique (CNRS) and Université de Montpellier. 29 rue de Navacelles, 34090 Montpellier, France.
  • Díaz-Quintana A; European Molecular Biology Laboratory, Hamburg Outstation, c/o Deutsches Elektronen-Synchrotron, Notkestr. 85, 22607 Hamburg, Germany.
  • Martinho M; Institute for Chemical Research (IIQ), Scientific Research Centre "Isla de la Cartuja" (cicCartuja), University of Seville and CSIC, Avda. Américo Vespucio, 49, 41092 Seville, Spain.
  • Gerbaud G; Aix Marseille Univ. Centre National de la Recherche Scientifique (CNRS), BIP UMR7281, Bioénergétique et Ingénierie des protéines, 13402 Marseille, France.
  • González-Arzola K; Aix Marseille Univ. Centre National de la Recherche Scientifique (CNRS), BIP UMR7281, Bioénergétique et Ingénierie des protéines, 13402 Marseille, France.
  • Velázquez-Campoy A; Institute for Chemical Research (IIQ), Scientific Research Centre "Isla de la Cartuja" (cicCartuja), University of Seville and CSIC, Avda. Américo Vespucio, 49, 41092 Seville, Spain.
  • Svergun D; Institute of Biocomputation and Physic of Complex Systems (BIFI), Joint Unit GBsC-CSIC-BIFI, Universidad de Zaragoza. C. de Mariano Esquillor Gómez, Edificio I+D, 50018 Zaragoza, Spain.
  • Belle V; Departamento de Bioquímica y Biología Molecular y Celular, Facultad de Ciencias, Universidad de Zaragoza, C. Pedro Cerbuna, 12, 50009 Zaragoza, Spain.
  • De la Rosa MA; Instituto de Investigación Sanitaria de Aragón (IIS Aragon), Zaragoza, Spain.
  • Díaz-Moreno I; Centro de Investigación Biomédica en Red en el Área Temática de Enfermedades Hepáticas y Digestivas (CIBERehd), C. de Melchor Fernández Almagro, 3, 28029 Madrid, Spain.
Comput Struct Biotechnol J ; 20: 3695-3707, 2022.
Article in En | MEDLINE | ID: mdl-35891793
Key words
ANP32B, Acidic leucine-rich nuclear phosphoprotein family member B; BTFA, 3-bromo-1,1,1-trifluoroacetone; CD, Circular dichroism; CDK9, Cyclin-dependent kinase 9; CW, Continuous wave; Cc, Cytochrome c; Cytochrome c; DDR, DNA damage response; DEER, Double electron­electron resonance; DLS, Dynamic light scattering; DMEM, Dulbecco's modified Eagle's medium; DNA, Deoxyribonucleic acid; DTT, Dithiotreitol; Dmax, Maximum dimension; EDTA, Ethylenediamine tetraacetic acid; EGTA, Ethyleneglycol tetraacetic acid; EPR, Electron paramagnetic resonance; Encounter complex; FBS, Fetal bovine serum; GUI, Graphical user interface; HEK, Human embryonic kidney cells; HRP, Horseradish peroxidase; I2PP2A, Inhibitor 2 of the protein phosphatase 2A; I3PP2A, Inhibitor 3 of the protein phosphatase 2A; INTAC, Integrator-PP2A complex; IPTG, Isopropyl-ß-D-1-thiogalactopyranoside; ITC, Isothermal titration calorimetry; Ip/Id, Intensity ratio of NMR resonances between paramagnetic and diamagnetic samples; LB, Luria-Bertani; MD, Molecular dynamics; MTS, (1-acetoxy-2,2,5,5-tetramethyl-δ-3-pyrroline-3-methyl) methanethiosulfonate; MTSL, (1-oxyl-2,2,5,5-tetramethyl- δ −3-pyrroline-3-methyl) methanethiosulfonate; MW, Molecular weight; Molecular dynamics; NAP1, Nucleosome assembly protein 1; NAPL, Nucleosome assembly protein L; NMA, Normal mode analysis; NMR, Nuclear magnetic resonance; NPT, Constant number, pressure and temperature; NVT, Constant number, volume and temperature; Nuclear magnetic resonance; OD600, Optical density measured at 600 nm; OPC, Optimal 3-charge, 4-point rigid water model; PCR, Polymerase chain reaction; PME, Particle mesh Ewald; PMSF, Phenylmethylsulfonyl fluoride; PP2A, Protein phosphatase 2A; PRE, Paramagnetic relaxation enhancement; PVDF, Polyvinylidene fluoride; Protein phosphatase 2A; RNA, Ribonucleic acid; RNApol II, RNA polymerase II; Rg, Radius of gyration; SAXS, Small-angle X-ray scattering; SC, Sample changer; SDS-PAGE, Sodium dodecylsulfate-polyacrylamide gel electrophoresis; SDSL, Site-directed spin labeling; SEC, Size-exclusion chromatography; SET/TAF-Iß; SET/TAF-Iß ΔC, SET/template-activating factor-Iß construct lacking its C-terminal domain; SET/TAF-Iß, SET/template-activating factor-Iß; SPRi, Surface plasmon resonance imaging; TAF-Iα, Template-activating factor-Iα; TPBS, Tween 20-phosphate buffered saline; VPS75, Vacuolar protein sorting-associated protein 75; WT, Wild type; XRD, X-ray diffraction

Full text: 1 Collection: 01-internacional Database: MEDLINE Type of study: Prognostic_studies Language: En Journal: Comput Struct Biotechnol J Year: 2022 Document type: Article Affiliation country: Spain

Full text: 1 Collection: 01-internacional Database: MEDLINE Type of study: Prognostic_studies Language: En Journal: Comput Struct Biotechnol J Year: 2022 Document type: Article Affiliation country: Spain