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Draft Genomes Sequences of 11 Geodermatophilaceae Strains Isolated from Building Stones from New England and Indian Stone Ruins found at historic sites in Tamil Nadu, India.
Ennis, Nathaniel J; Dharumadurai, Dhanasekaran; Sevigny, Joseph L; Wilmot, Ryan; Alnaimat, Sulaiman M; Bryce, Julia G; Thomas, W Kelley; Tisa, Louis S.
Affiliation
  • Ennis NJ; Department of Molecular, Cellular, and Biomedical Sciences, University of New Hampshire, Durham, New Hampshire, USA.
  • Dharumadurai D; Present address: Seres Therapeutics, Cambridge, MA, USA.
  • Sevigny JL; Department of Molecular, Cellular, and Biomedical Sciences, University of New Hampshire, Durham, New Hampshire, USA.
  • Wilmot R; Departments of Microbiology, Bharathidasan University, Tiruchirappalli, Tamil Nadu, India.
  • Alnaimat SM; Department of Molecular, Cellular, and Biomedical Sciences, University of New Hampshire, Durham, New Hampshire, USA.
  • Bryce JG; Hubbard Center for Genome Studies, University of New Hampshire, Durham, New Hampshire, USA.
  • Thomas WK; Department of Molecular, Cellular, and Biomedical Sciences, University of New Hampshire, Durham, New Hampshire, USA.
  • Tisa LS; Department of Molecular, Cellular, and Biomedical Sciences, University of New Hampshire, Durham, New Hampshire, USA.
J Genomics ; 10: 69-77, 2022.
Article in En | MEDLINE | ID: mdl-36176899
ABSTRACT
Metagenomic analysis of stone microbiome from samples collected in New England, USA and Tamil Nadu, India identified numerous Actinobacteria including Geodermatphilaceae. A culture-dependent approach was performed as a companion study with this culture-independent metagenomic analysis of these stone samples and resulted in the isolation of eleven Geodermatphilaceae strains (2 Geodermatophilus and 9 Blastococcus strains). The genomes of the 11 Geodermatphilaceae strains were sequenced and analyzed. The genomes for the two Geodermatophilus isolates, DF1-2 and TF2-6, were 4.45 and 4.75 Mb, respectively, while the Blastococcus genomes ranged in size from 3.98 to 5.48 Mb. Phylogenetic analysis, digital DNADNA hybridization (dDDH), and comparisons of the average nucleotide identities (ANI) suggest the isolates represent novel Geodermatophilus and Blastococcus species. Functional analysis of the Geodermatphilaceae genomes provides insight on the stone microbiome niche.
Key words

Full text: 1 Collection: 01-internacional Database: MEDLINE Type of study: Prognostic_studies Language: En Journal: J Genomics Year: 2022 Document type: Article Affiliation country: United States

Full text: 1 Collection: 01-internacional Database: MEDLINE Type of study: Prognostic_studies Language: En Journal: J Genomics Year: 2022 Document type: Article Affiliation country: United States