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Decision support system and outcome prediction in a cohort of patients with necrotizing soft-tissue infections.
Katz, Sonja; Suijker, Jaco; Hardt, Christopher; Madsen, Martin Bruun; Vries, Annebeth Meij-de; Pijpe, Anouk; Skrede, Steinar; Hyldegaard, Ole; Solligård, Erik; Norrby-Teglund, Anna; Saccenti, Edoardo; Martins Dos Santos, Vitor A P.
Affiliation
  • Katz S; LifeGlimmer GmbH, Berlin, Germany; Laboratory of Systems and Synthetic Biology, Wageningen University and Research, Wageningen, the Netherlands.
  • Suijker J; Burn Centre, Red Cross Hospital, Beverwijk, the Netherlands; Department of Plastic, Reconstructive and Hand Surgery, Amsterdam Movement Sciences Amsterdam UMC, Amsterdam, the Netherlands; Association of Dutch Burn Centers, Beverwijk, the Netherlands.
  • Hardt C; LifeGlimmer GmbH, Berlin, Germany.
  • Madsen MB; Department of Intensive Care, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark.
  • Vries AM; Burn Centre, Red Cross Hospital, Beverwijk, the Netherlands; Pediatric Surgical Centre, Emma Children's Hospital, Amsterdam UMC, Amsterdam, the Netherlands.
  • Pijpe A; Burn Centre, Red Cross Hospital, Beverwijk, the Netherlands; Department of Plastic, Reconstructive and Hand Surgery, Amsterdam Movement Sciences Amsterdam UMC, Amsterdam, the Netherlands.
  • Skrede S; Department of Medicine, Haukeland University Hospital, Bergen, Norway; Department of Clinical Science, University of Bergen, Bergen, Norway.
  • Hyldegaard O; Department of Anesthesia, Hyperbaric Unit, University Hospital of Copenhagen, Rigshospitalet, Copenhagen, Denmark.
  • Solligård E; Clinic of Anaesthesia and Intensive Care, St. Olavs Hospital, Trondheim University Hospital, Trondheim, Norway; Gemini Center for Sepsis Research, Department of Circulation and Medical Imaging, NTNU Norwegian University of Science and Technology, Trondheim, Norway.
  • Norrby-Teglund A; Centre for Infectious Medicine, Department of Medicine Huddinge, Karolinska Institute, Stockholm, Sweden.
  • Saccenti E; Laboratory of Systems and Synthetic Biology, Wageningen University and Research, Wageningen, the Netherlands.
  • Martins Dos Santos VAP; LifeGlimmer GmbH, Berlin, Germany; Laboratory of Systems and Synthetic Biology, Wageningen University and Research, Wageningen, the Netherlands. Electronic address: vitor.martinsdossantos@wur.nl.
Int J Med Inform ; 167: 104878, 2022 11.
Article in En | MEDLINE | ID: mdl-36194993
INTRODUCTION: Necrotizing Soft Tissue Infections (NSTI) are severe infections with high mortality affecting a heterogeneous patient population. There is a need for a clinical decision support system which predicts outcomes and provides treatment recommendations early in the disease course. METHODS: To identify relevant clinical needs, interviews with eight medical professionals (surgeons, intensivists, general practitioner, emergency department physician) were conducted. This resulted in 24 unique questions. Mortality was selected as first endpoint to develop a machine learning (Random Forest) based prediction model. For this purpose, data from the prospective, international INFECT cohort (N = 409) was used. RESULTS: Applying a feature selection procedure based on an unsupervised algorithm (Boruta) to the  > 1000 variables available in INFECT, including baseline, and both NSTI specific and NSTI non-specific clinical data yielded sixteen predictive parameters available on or prior to the first day on the intensive care unit (ICU). Using these sixteen variables 30-day mortality could be accurately predicted (AUC = 0.91, 95% CI 0.88-0.96). Except for age, all variables were related to sepsis (e.g. lactate, urine production, systole). No NSTI-specific variables were identified. Predictions significantly outperformed the SOFA score(p < 0.001, AUC = 0.77, 95% CI 0.69-0.84) and exceeded but did not significantly differ from the SAPS II score (p = 0.07, AUC = 0.88, 95% CI 0.83-0.92). The developed model proved to be stable with AUC  > 0.8 in case of high rates of missing data (50% missing) or when only using very early (<1 h) available variables. CONCLUSIONS: This study shows that mortality can be accurately predicted using a machine learning model. It lays the foundation for a more extensive, multi-endpoint clinical decision support system in which ultimately other outcomes and clinical questions (risk for septic shock, AKI, causative microbe) will be included.
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Soft Tissue Infections Type of study: Etiology_studies / Guideline / Incidence_studies / Observational_studies / Prognostic_studies / Risk_factors_studies Limits: Humans Language: En Journal: Int J Med Inform Journal subject: INFORMATICA MEDICA Year: 2022 Document type: Article Affiliation country: Netherlands Country of publication: Ireland

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Soft Tissue Infections Type of study: Etiology_studies / Guideline / Incidence_studies / Observational_studies / Prognostic_studies / Risk_factors_studies Limits: Humans Language: En Journal: Int J Med Inform Journal subject: INFORMATICA MEDICA Year: 2022 Document type: Article Affiliation country: Netherlands Country of publication: Ireland