AlphaPulldown-a python package for protein-protein interaction screens using AlphaFold-Multimer.
Bioinformatics
; 39(1)2023 01 01.
Article
in En
| MEDLINE
| ID: mdl-36413069
ABSTRACT
SUMMARY:
The artificial intelligence-based structure prediction program AlphaFold-Multimer enabled structural modelling of protein complexes with unprecedented accuracy. Increasingly, AlphaFold-Multimer is also used to discover new protein-protein interactions (PPIs). Here, we present AlphaPulldown, a Python package that streamlines PPI screens and high-throughput modelling of higher-order oligomers using AlphaFold-Multimer. It provides a convenient command-line interface, a variety of confidence scores and a graphical analysis tool. AVAILABILITY AND IMPLEMENTATION AlphaPulldown is freely available at https//www.embl-hamburg.de/AlphaPulldown. SUPPLEMENTARY INFORMATION Supplementary note is available at Bioinformatics online.
Full text:
1
Collection:
01-internacional
Database:
MEDLINE
Main subject:
Software
/
Artificial Intelligence
Type of study:
Prognostic_studies
Language:
En
Journal:
Bioinformatics
Journal subject:
INFORMATICA MEDICA
Year:
2023
Document type:
Article
Affiliation country:
Germany