Using whole genome sequence to compare variant callers and breed differences of US sheep.

Stegemiller, Morgan R; Redden, Reid R; Notter, David R; Taylor, Todd; Taylor, J Bret; Cockett, Noelle E; Heaton, Michael P; Kalbfleisch, Theodore S; Murdoch, Brenda M

Stegemiller, Morgan R; Redden, Reid R; Notter, David R; Taylor, Todd; Taylor, J Bret; Cockett, Noelle E; Heaton, Michael P; Kalbfleisch, Theodore S; Murdoch, Brenda M.

Affiliation

Stegemiller MR; Department of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, United States.
Redden RR; Texas A&M AgriLife Research and Extension, Texas A&M University, San Angelo, TX, United States.
Notter DR; School of Animal Sciences, Virginia Tech, Blacksburg, VA, United States.
Taylor T; Department of Animal and Dairy Sciences, University of Wisconsin-Madison, Madison, WI, United States.
Taylor JB; United States Sheep Experiment Station, United States Department of Agriculture, Agricultural Research Service, Dubois, ID, United States.
Cockett NE; Department of Animal, Dairy and Veterinary Sciences, Utah State University, Logan, UT, United States.
Heaton MP; USDA, ARS, U.S. Meat Animal Research Center, Clay Center, NE, United States.
Kalbfleisch TS; Gluck Equine Research Center, College of Agriculture, Food, and Environment, University of Kentucky, Lexington, KY, United States.
Murdoch BM; Department of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, United States.

Front Genet ; 13: 1060882, 2022.

Article in En | MEDLINE | ID: mdl-36685812

Key words

GATK HaplotypeCaller (HC); freebayes; sheep; variant callers; whole genome sequence

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Full text: 1 Collection: 01-internacional Database: MEDLINE Type of study: Prognostic_studies Language: En Journal: Front Genet Year: 2022 Document type: Article Affiliation country: United States Country of publication: Switzerland

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