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Pan-genome inversion index reveals evolutionary insights into the subpopulation structure of Asian rice.
Zhou, Yong; Yu, Zhichao; Chebotarov, Dmytro; Chougule, Kapeel; Lu, Zhenyuan; Rivera, Luis F; Kathiresan, Nagarajan; Al-Bader, Noor; Mohammed, Nahed; Alsantely, Aseel; Mussurova, Saule; Santos, João; Thimma, Manjula; Troukhan, Maxim; Fornasiero, Alice; Green, Carl D; Copetti, Dario; Kudrna, David; Llaca, Victor; Lorieux, Mathias; Zuccolo, Andrea; Ware, Doreen; McNally, Kenneth; Zhang, Jianwei; Wing, Rod A.
Affiliation
  • Zhou Y; Center for Desert Agriculture (CDA), Biological and Environmental Sciences & Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia.
  • Yu Z; Arizona Genomics Institute (AGI), School of Plant Sciences, University of Arizona, Tucson, AZ, 85721, USA.
  • Chebotarov D; National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, 430070, China.
  • Chougule K; International Rice Research Institute (IRRI), Los Baños, 4031, Laguna, Philippines.
  • Lu Z; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, 11724, USA.
  • Rivera LF; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, 11724, USA.
  • Kathiresan N; Center for Desert Agriculture (CDA), Biological and Environmental Sciences & Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia.
  • Al-Bader N; Supercomputing Core Lab, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia.
  • Mohammed N; Center for Desert Agriculture (CDA), Biological and Environmental Sciences & Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia.
  • Alsantely A; Center for Desert Agriculture (CDA), Biological and Environmental Sciences & Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia.
  • Mussurova S; Center for Desert Agriculture (CDA), Biological and Environmental Sciences & Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia.
  • Santos J; Center for Desert Agriculture (CDA), Biological and Environmental Sciences & Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia.
  • Thimma M; Center for Desert Agriculture (CDA), Biological and Environmental Sciences & Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia.
  • Troukhan M; Center for Desert Agriculture (CDA), Biological and Environmental Sciences & Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia.
  • Fornasiero A; Persephone Software, LLC, Agoura Hills, CA, 91301, USA.
  • Green CD; Center for Desert Agriculture (CDA), Biological and Environmental Sciences & Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia.
  • Copetti D; Information Technology Department, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia.
  • Kudrna D; Arizona Genomics Institute (AGI), School of Plant Sciences, University of Arizona, Tucson, AZ, 85721, USA.
  • Llaca V; Arizona Genomics Institute (AGI), School of Plant Sciences, University of Arizona, Tucson, AZ, 85721, USA.
  • Lorieux M; Research and Development, Corteva Agriscience, Johnston, IA, 50131, USA.
  • Zuccolo A; DIADE, University of Montpellier, CIRAD, IRD, Montpellier, France.
  • Ware D; Center for Desert Agriculture (CDA), Biological and Environmental Sciences & Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia. andrea.zuccolo@kaust.edu.sa.
  • McNally K; Crop Science Research Center (CSRC), Scuola Superiore Sant'Anna, Pisa, 56127, Italy. andrea.zuccolo@kaust.edu.sa.
  • Zhang J; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, 11724, USA. Doreen.ware@usda.gov.
  • Wing RA; USDA ARS NEA Plant, Soil & Nutrition Laboratory Research Unit, Ithaca, NY, 14853, USA. Doreen.ware@usda.gov.
Nat Commun ; 14(1): 1567, 2023 03 21.
Article in En | MEDLINE | ID: mdl-36944612
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Oryza Type of study: Risk_factors_studies Language: En Journal: Nat Commun Journal subject: BIOLOGIA / CIENCIA Year: 2023 Document type: Article Affiliation country: Saudi Arabia Country of publication: United kingdom
Fulltext
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Oryza Type of study: Risk_factors_studies Language: En Journal: Nat Commun Journal subject: BIOLOGIA / CIENCIA Year: 2023 Document type: Article Affiliation country: Saudi Arabia Country of publication: United kingdom