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The CCP4 suite: integrative software for macromolecular crystallography.
Agirre, Jon; Atanasova, Mihaela; Bagdonas, Haroldas; Ballard, Charles B; Baslé, Arnaud; Beilsten-Edmands, James; Borges, Rafael J; Brown, David G; Burgos-Mármol, J Javier; Berrisford, John M; Bond, Paul S; Caballero, Iracema; Catapano, Lucrezia; Chojnowski, Grzegorz; Cook, Atlanta G; Cowtan, Kevin D; Croll, Tristan I; Debreczeni, Judit É; Devenish, Nicholas E; Dodson, Eleanor J; Drevon, Tarik R; Emsley, Paul; Evans, Gwyndaf; Evans, Phil R; Fando, Maria; Foadi, James; Fuentes-Montero, Luis; Garman, Elspeth F; Gerstel, Markus; Gildea, Richard J; Hatti, Kaushik; Hekkelman, Maarten L; Heuser, Philipp; Hoh, Soon Wen; Hough, Michael A; Jenkins, Huw T; Jiménez, Elisabet; Joosten, Robbie P; Keegan, Ronan M; Keep, Nicholas; Krissinel, Eugene B; Kolenko, Petr; Kovalevskiy, Oleg; Lamzin, Victor S; Lawson, David M; Lebedev, Andrey A; Leslie, Andrew G W; Lohkamp, Bernhard; Long, Fei; Malý, Martin.
Affiliation
  • Agirre J; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom.
  • Atanasova M; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom.
  • Bagdonas H; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom.
  • Ballard CB; STFC, Rutherford Appleton Laboratory, Didcot OX11 0FA, United Kingdom.
  • Baslé A; Biosciences Institute, Newcastle University, Newcastle upon Tyne NE2 4HH, United Kingdom.
  • Beilsten-Edmands J; Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom.
  • Borges RJ; The Center of Medicinal Chemistry (CQMED), Center for Molecular Biology and Genetic Engineering (CBMEG), University of Campinas (UNICAMP), Av. Dr. André Tosello 550, 13083-886 Campinas, Brazil.
  • Brown DG; Laboratoires Servier SAS Institut de Recherches, Croissy-sur-Seine, France.
  • Burgos-Mármol JJ; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom.
  • Berrisford JM; Protein Data Bank in Europe, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.
  • Bond PS; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom.
  • Caballero I; Crystallographic Methods, Institute of Molecular Biology of Barcelona (IBMB-CSIC), Barcelona Science Park, Helix Building, Baldiri Reixac 15, 08028 Barcelona, Spain.
  • Catapano L; MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, United Kingdom.
  • Chojnowski G; European Molecular Biology Laboratory, Hamburg Unit, Notkestrasse 85, 22607 Hamburg, Germany.
  • Cook AG; The Wellcome Centre for Cell Biology, University of Edinburgh, Michael Swann Building, Max Born Crescent, The King's Buildings, Edinburgh EH9 3BF, United Kingdom.
  • Cowtan KD; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom.
  • Croll TI; Department of Haematology, Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge CB2 0XY, United Kingdom.
  • Debreczeni JÉ; Discovery Sciences, R&D BioPharmaceuticals, AstraZeneca, Darwin Building, Cambridge Science Park, Milton Road, Cambridge CB4 0WG, United Kingdom.
  • Devenish NE; Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom.
  • Dodson EJ; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom.
  • Drevon TR; STFC, Rutherford Appleton Laboratory, Didcot OX11 0FA, United Kingdom.
  • Emsley P; MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, United Kingdom.
  • Evans G; Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom.
  • Evans PR; MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, United Kingdom.
  • Fando M; STFC, Rutherford Appleton Laboratory, Didcot OX11 0FA, United Kingdom.
  • Foadi J; Department of Mathematical Sciences, University of Bath, Bath, United Kingdom.
  • Fuentes-Montero L; Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom.
  • Garman EF; Department of Biochemistry, University of Oxford, Dorothy Crowfoot Hodgkin Building, Oxford OX1 3QU, United Kingdom.
  • Gerstel M; Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom.
  • Gildea RJ; Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom.
  • Hatti K; Department of Haematology, Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge CB2 0XY, United Kingdom.
  • Hekkelman ML; Oncode Institute and Department of Biochemistry, Netherlands Cancer Institute, Amsterdam, The Netherlands.
  • Heuser P; European Molecular Biology Laboratory, c/o DESY, Notkestrasse 85, 22607 Hamburg, Germany.
  • Hoh SW; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom.
  • Hough MA; Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom.
  • Jenkins HT; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom.
  • Jiménez E; Crystallographic Methods, Institute of Molecular Biology of Barcelona (IBMB-CSIC), Barcelona Science Park, Helix Building, Baldiri Reixac 15, 08028 Barcelona, Spain.
  • Joosten RP; Oncode Institute and Department of Biochemistry, Netherlands Cancer Institute, Amsterdam, The Netherlands.
  • Keegan RM; STFC, Rutherford Appleton Laboratory, Didcot OX11 0FA, United Kingdom.
  • Keep N; Department of Biological Sciences, Institute of Structural and Molecular Biology, Birkbeck College, London WC1E 7HX, United Kingdom.
  • Krissinel EB; STFC, Rutherford Appleton Laboratory, Didcot OX11 0FA, United Kingdom.
  • Kolenko P; Faculty of Nuclear Sciences and Physical Engineering, Czech Technical University in Prague, Brehová 7, 115 19 Prague 1, Czech Republic.
  • Kovalevskiy O; STFC, Rutherford Appleton Laboratory, Didcot OX11 0FA, United Kingdom.
  • Lamzin VS; European Molecular Biology Laboratory, Hamburg Unit, Notkestrasse 85, 22607 Hamburg, Germany.
  • Lawson DM; Department of Biochemistry and Metabolism, John Innes Centre, Norwich NR4 7UH, United Kingdom.
  • Lebedev AA; STFC, Rutherford Appleton Laboratory, Didcot OX11 0FA, United Kingdom.
  • Leslie AGW; MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, United Kingdom.
  • Lohkamp B; Department of Medical Biochemistry and Biophysics, Karolinska Institutet, SE-171 77 Stockholm, Sweden.
  • Long F; MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, United Kingdom.
  • Malý M; Biological Sciences, Institute for Life Sciences, University of Southampton, Southampton SO17 1BJ, United Kingdom.
Acta Crystallogr D Struct Biol ; 79(Pt 6): 449-461, 2023 Jun 01.
Article in En | MEDLINE | ID: mdl-37259835
ABSTRACT
The Collaborative Computational Project No. 4 (CCP4) is a UK-led international collective with a mission to develop, test, distribute and promote software for macromolecular crystallography. The CCP4 suite is a multiplatform collection of programs brought together by familiar execution routines, a set of common libraries and graphical interfaces. The CCP4 suite has experienced several considerable changes since its last reference article, involving new infrastructure, original programs and graphical interfaces. This article, which is intended as a general literature citation for the use of the CCP4 software suite in structure determination, will guide the reader through such transformations, offering a general overview of the new features and outlining future developments. As such, it aims to highlight the individual programs that comprise the suite and to provide the latest references to them for perusal by crystallographers around the world.
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Software / Proteins Language: En Journal: Acta Crystallogr D Struct Biol Year: 2023 Document type: Article Affiliation country: United kingdom
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Software / Proteins Language: En Journal: Acta Crystallogr D Struct Biol Year: 2023 Document type: Article Affiliation country: United kingdom