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SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data.
Lee, Lindsay; Yu, Hongyu; Jia, Bojing Blair; Jussila, Adam; Zhu, Chenxu; Chen, Jiawen; Xie, Liangqi; Hafner, Antonina; Mishra, Shreya; Wang, Duan Dennis; Strambio-De-Castillia, Caterina; Boettiger, Alistair; Ren, Bing; Li, Yun; Hu, Ming.
Affiliation
  • Lee L; Department of Quantitative Health Sciences, Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, OH, USA.
  • Yu H; Department of Statistics, University of Wisconsin Madison, Madison, WI, USA.
  • Jia BB; Department of Biochemistry, University of Wisconsin Madison, Madison, WI, USA.
  • Jussila A; Bioinformatics and Systems Biology Graduate Program, University of California San Diego, La Jolla, CA, USA.
  • Zhu C; Medical Scientist Training Program, University of California San Diego, La Jolla, CA, USA.
  • Chen J; Bioinformatics and Systems Biology Graduate Program, University of California San Diego, La Jolla, CA, USA.
  • Xie L; Ludwig Institute for Cancer Research, La Jolla, CA, USA.
  • Hafner A; New York Genome Center, New York, NY, USA.
  • Mishra S; Department of Physiology and Biophysics, Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY, USA.
  • Wang DD; Department of Biostatistics, University of North Carolina, Chapel Hill, NC, USA.
  • Strambio-De-Castillia C; Department of Infection Biology, Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, OH, USA.
  • Boettiger A; Department of Cancer Biology, Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, OH, USA.
  • Ren B; Department of Developmental Biology, Stanford University, Stanford, CA, USA.
  • Li Y; Department of Quantitative Health Sciences, Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, OH, USA.
  • Hu M; Chapel Hill High School, Chapel Hill, NC, USA.
Nat Commun ; 14(1): 4873, 2023 08 12.
Article in En | MEDLINE | ID: mdl-37573342
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: DNA / Chromatin Limits: Animals Language: En Journal: Nat Commun Journal subject: BIOLOGIA / CIENCIA Year: 2023 Document type: Article Affiliation country: United States Country of publication: United kingdom
Fulltext
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: DNA / Chromatin Limits: Animals Language: En Journal: Nat Commun Journal subject: BIOLOGIA / CIENCIA Year: 2023 Document type: Article Affiliation country: United States Country of publication: United kingdom