Your browser doesn't support javascript.
loading
Ocean-wide comparisons of mesopelagic planktonic community structures.
Rigonato, Janaina; Budinich, Marko; Murillo, Alejandro A; Brandão, Manoela C; Pierella Karlusich, Juan J; Soviadan, Yawouvi Dodji; Gregory, Ann C; Endo, Hisashi; Kokoszka, Florian; Vik, Dean; Henry, Nicolas; Frémont, Paul; Labadie, Karine; Zayed, Ahmed A; Dimier, Céline; Picheral, Marc; Searson, Sarah; Poulain, Julie; Kandels, Stefanie; Pesant, Stéphane; Karsenti, Eric; Bork, Peer; Bowler, Chris; de Vargas, Colomban; Eveillard, Damien; Gehlen, Marion; Iudicone, Daniele; Lombard, Fabien; Ogata, Hiroyuki; Stemmann, Lars; Sullivan, Matthew B; Sunagawa, Shinichi; Wincker, Patrick; Chaffron, Samuel; Jaillon, Olivier.
Affiliation
  • Rigonato J; Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, Commissariat à l'Energie Atomique (CEA), CNRS, Université Evry, Université Paris-Saclay, 91000, Evry, France. jrigonat@genoscope.cns.fr.
  • Budinich M; Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016, Paris, France. jrigonat@genoscope.cns.fr.
  • Murillo AA; Sorbonne Université, CNRS, Station Biologique de Roscoff, AD2M, UMR 7144, 29680, Roscoff, France.
  • Brandão MC; Nantes Université, École Centrale Nantes, CNRS, LS2N, UMR 6004, F-44000, Nantes, France.
  • Pierella Karlusich JJ; Structural and Computational Biology, European Molecular Biology Laboratory, Meyerhofstr. 1, 69117, Heidelberg, Germany.
  • Soviadan YD; Sorbonne Université, CNRS, Institut de la Mer de Villefranche sur mer, Laboratoire d'Océanographie de Villefranche, 06230, Villefranche-sur-Mer, France.
  • Gregory AC; Institut de Biologie de l'ENS (IBENS), Département de biologie, Ecole normale supérieure, CNRS, INSERM, Université PSL, 75005, Paris, France.
  • Endo H; Sorbonne Université, CNRS, Institut de la Mer de Villefranche sur mer, Laboratoire d'Océanographie de Villefranche, 06230, Villefranche-sur-Mer, France.
  • Kokoszka F; Department of Microbiology, The Ohio State University, Columbus, OH, 43214, USA.
  • Vik D; Bioinformatics Center, Institute for Chemical Research Kyoto University, Gokasho, Uji, Kyoto, 611-0011, Japan.
  • Henry N; Institut de Biologie de l'ENS (IBENS), Département de biologie, Ecole normale supérieure, CNRS, INSERM, Université PSL, 75005, Paris, France.
  • Frémont P; Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Naples, Italy.
  • Labadie K; Department of Microbiology, The Ohio State University, Columbus, OH, 43214, USA.
  • Zayed AA; Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016, Paris, France.
  • Dimier C; Sorbonne Université, CNRS, Station Biologique de Roscoff, AD2M, UMR 7144, 29680, Roscoff, France.
  • Picheral M; Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, Commissariat à l'Energie Atomique (CEA), CNRS, Université Evry, Université Paris-Saclay, 91000, Evry, France.
  • Searson S; Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, Commissariat à l'Energie Atomique (CEA), CNRS, Université Evry, Université Paris-Saclay, 91000, Evry, France.
  • Poulain J; Department of Microbiology, The Ohio State University, Columbus, OH, 43214, USA.
  • Kandels S; Sorbonne Université, CNRS, Institut de la Mer de Villefranche sur mer, Laboratoire d'Océanographie de Villefranche, 06230, Villefranche-sur-Mer, France.
  • Pesant S; Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016, Paris, France.
  • Karsenti E; Sorbonne Université, CNRS, Institut de la Mer de Villefranche sur mer, Laboratoire d'Océanographie de Villefranche, 06230, Villefranche-sur-Mer, France.
  • Bork P; Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, Commissariat à l'Energie Atomique (CEA), CNRS, Université Evry, Université Paris-Saclay, 91000, Evry, France.
  • Bowler C; Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016, Paris, France.
  • de Vargas C; Structural and Computational Biology, European Molecular Biology Laboratory, Meyerhofstr. 1, 69117, Heidelberg, Germany.
  • Eveillard D; Directors' Research European Molecular Biology Laboratory Meyerhofstr. 1, 69117, Heidelberg, Germany.
  • Gehlen M; MARUM, Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany.
  • Iudicone D; PANGAEA, Data Publisher for Earth and Environmental Science, University of Bremen, Bremen, Germany.
  • Lombard F; Institut de Biologie de l'ENS (IBENS), Département de biologie, Ecole normale supérieure, CNRS, INSERM, Université PSL, 75005, Paris, France.
  • Ogata H; Directors' Research European Molecular Biology Laboratory Meyerhofstr. 1, 69117, Heidelberg, Germany.
  • Sullivan MB; Structural and Computational Biology, European Molecular Biology Laboratory, Meyerhofstr. 1, 69117, Heidelberg, Germany.
  • Sunagawa S; Department of Bioinformatics, Biocenter, University of Würzburg, Würzburg, Germany.
  • Wincker P; Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016, Paris, France.
  • Chaffron S; Institut de Biologie de l'ENS (IBENS), Département de biologie, Ecole normale supérieure, CNRS, INSERM, Université PSL, 75005, Paris, France.
  • Jaillon O; Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016, Paris, France.
ISME Commun ; 3(1): 83, 2023 Aug 18.
Article in En | MEDLINE | ID: mdl-37596349
ABSTRACT
For decades, marine plankton have been investigated for their capacity to modulate biogeochemical cycles and provide fishery resources. Between the sunlit (epipelagic) layer and the deep dark waters, lies a vast and heterogeneous part of the ocean the mesopelagic zone. How plankton composition is shaped by environment has been well-explored in the epipelagic but much less in the mesopelagic ocean. Here, we conducted comparative analyses of trans-kingdom community assemblages thriving in the mesopelagic oxygen minimum zone (OMZ), mesopelagic oxic, and their epipelagic counterparts. We identified nine distinct types of intermediate water masses that correlate with variation in mesopelagic community composition. Furthermore, oxygen, NO3- and particle flux together appeared as the main drivers governing these communities. Novel taxonomic signatures emerged from OMZ while a global co-occurrence network analysis showed that about 70% of the abundance of mesopelagic plankton groups is organized into three community modules. One module gathers prokaryotes, pico-eukaryotes and Nucleo-Cytoplasmic Large DNA Viruses (NCLDV) from oxic regions, and the two other modules are enriched in OMZ prokaryotes and OMZ pico-eukaryotes, respectively. We hypothesize that OMZ conditions led to a diversification of ecological niches, and thus communities, due to selective pressure from limited resources. Our study further clarifies the interplay between environmental factors in the mesopelagic oxic and OMZ, and the compositional features of communities.

Full text: 1 Collection: 01-internacional Database: MEDLINE Type of study: Prognostic_studies Language: En Journal: ISME Commun Year: 2023 Document type: Article Affiliation country: France

Full text: 1 Collection: 01-internacional Database: MEDLINE Type of study: Prognostic_studies Language: En Journal: ISME Commun Year: 2023 Document type: Article Affiliation country: France
...