Enhancement and external validation of algorithms using diagnosis codes to identify invasive Escherichia coli disease.
Curr Med Res Opin
; 39(10): 1303-1312, 2023 10.
Article
in En
| MEDLINE
| ID: mdl-37608706
ABSTRACT
OBJECTIVE:
To assess the predictive accuracy of code-based algorithms for identifying invasive Escherichia coli (E. coli) disease (IED) among inpatient encounters in US hospitals.METHODS:
The PINC AI Healthcare Database (10/01/2015-03/31/2020) was used to assess the performance of six published code-based algorithms to identify IED cases among inpatient encounters. Case-confirmed IEDs were identified based on microbiological confirmation of E. coli in a normally sterile body site (Group 1) or in urine with signs of sepsis (Group 2). Code-based algorithm performance was assessed overall, and separately for Group 1 and Group 2 based on sensitivity, specificity, positive and negative predictive value (PPV and NPV) and F1 score. The improvement in performance of refinements to the best-performing algorithm was also assessed.RESULTS:
Among 2,595,983 encounters, 97,453 (3.8%) were case-confirmed IED (Group 1 60.9%; Group 2 39.1%). Across algorithms, specificity and NPV were excellent (>97%) for all but one algorithm, but there was a trade-off between sensitivity and PPV. The algorithm with the most balanced performance characteristics included diagnosis codes for (1) infectious disease due to E. coli OR (2) sepsis/bacteremia/organ dysfunction combined with unspecified E. coli infection and no other concomitant non-E. coli invasive disease (sensitivity 56.9%; PPV 56.4%). Across subgroups, the algorithms achieved lower algorithm performance for Group 2 (sensitivity 9.9%-61.1%; PPV 3.8%-16.0%).CONCLUSIONS:
This study assessed code-based algorithms to identify IED during inpatient encounters in a large US hospital database. Such algorithms could be useful to identify IED in healthcare databases that lack information on microbiology data.Key words
Full text:
1
Collection:
01-internacional
Database:
MEDLINE
Main subject:
Sepsis
/
Infertility
Type of study:
Diagnostic_studies
/
Prognostic_studies
Limits:
Humans
Language:
En
Journal:
Curr Med Res Opin
Year:
2023
Document type:
Article
Affiliation country:
Belgium