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Federated and distributed learning applications for electronic health records and structured medical data: a scoping review.
Li, Siqi; Liu, Pinyan; Nascimento, Gustavo G; Wang, Xinru; Leite, Fabio Renato Manzolli; Chakraborty, Bibhas; Hong, Chuan; Ning, Yilin; Xie, Feng; Teo, Zhen Ling; Ting, Daniel Shu Wei; Haddadi, Hamed; Ong, Marcus Eng Hock; Peres, Marco Aurélio; Liu, Nan.
Affiliation
  • Li S; Centre for Quantitative Medicine, Duke-NUS Medical School, Singapore 169857, Singapore.
  • Liu P; Centre for Quantitative Medicine, Duke-NUS Medical School, Singapore 169857, Singapore.
  • Nascimento GG; National Dental Research Institute Singapore, National Dental Centre Singapore, Singapore 168938, Singapore.
  • Wang X; Oral Health Academic Clinical Programme, Duke-NUS Medical School, Singapore 169857, Singapore.
  • Leite FRM; Centre for Quantitative Medicine, Duke-NUS Medical School, Singapore 169857, Singapore.
  • Chakraborty B; National Dental Research Institute Singapore, National Dental Centre Singapore, Singapore 168938, Singapore.
  • Hong C; Oral Health Academic Clinical Programme, Duke-NUS Medical School, Singapore 169857, Singapore.
  • Ning Y; Centre for Quantitative Medicine, Duke-NUS Medical School, Singapore 169857, Singapore.
  • Xie F; Programme in Health Services and Systems Research, Duke-NUS Medical School, Singapore 169857, Singapore.
  • Teo ZL; Department of Statistics and Data Science, National University of Singapore, Singapore 117546, Singapore.
  • Ting DSW; Department of Biostatistics and Bioinformatics, Duke University, Durham, NC 27708, United States.
  • Haddadi H; Department of Biostatistics and Bioinformatics, Duke University, Durham, NC 27708, United States.
  • Ong MEH; Centre for Quantitative Medicine, Duke-NUS Medical School, Singapore 169857, Singapore.
  • Peres MA; Centre for Quantitative Medicine, Duke-NUS Medical School, Singapore 169857, Singapore.
  • Liu N; Programme in Health Services and Systems Research, Duke-NUS Medical School, Singapore 169857, Singapore.
J Am Med Inform Assoc ; 30(12): 2041-2049, 2023 11 17.
Article in En | MEDLINE | ID: mdl-37639629
ABSTRACT

OBJECTIVES:

Federated learning (FL) has gained popularity in clinical research in recent years to facilitate privacy-preserving collaboration. Structured data, one of the most prevalent forms of clinical data, has experienced significant growth in volume concurrently, notably with the widespread adoption of electronic health records in clinical practice. This review examines FL applications on structured medical data, identifies contemporary limitations, and discusses potential innovations. MATERIALS AND

METHODS:

We searched 5 databases, SCOPUS, MEDLINE, Web of Science, Embase, and CINAHL, to identify articles that applied FL to structured medical data and reported results following the PRISMA guidelines. Each selected publication was evaluated from 3 primary perspectives, including data quality, modeling strategies, and FL frameworks.

RESULTS:

Out of the 1193 papers screened, 34 met the inclusion criteria, with each article consisting of one or more studies that used FL to handle structured clinical/medical data. Of these, 24 utilized data acquired from electronic health records, with clinical predictions and association studies being the most common clinical research tasks that FL was applied to. Only one article exclusively explored the vertical FL setting, while the remaining 33 explored the horizontal FL setting, with only 14 discussing comparisons between single-site (local) and FL (global) analysis.

CONCLUSIONS:

The existing FL applications on structured medical data lack sufficient evaluations of clinically meaningful benefits, particularly when compared to single-site analyses. Therefore, it is crucial for future FL applications to prioritize clinical motivations and develop designs and methodologies that can effectively support and aid clinical practice and research.
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Electronic Health Records / Learning Type of study: Guideline / Prognostic_studies / Systematic_reviews Language: En Journal: J Am Med Inform Assoc Journal subject: INFORMATICA MEDICA Year: 2023 Document type: Article Affiliation country: Singapore

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Electronic Health Records / Learning Type of study: Guideline / Prognostic_studies / Systematic_reviews Language: En Journal: J Am Med Inform Assoc Journal subject: INFORMATICA MEDICA Year: 2023 Document type: Article Affiliation country: Singapore