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Prediction of American Society of Anesthesiologists Physical Status Classification from preoperative clinical text narratives using natural language processing.
Chung, Philip; Fong, Christine T; Walters, Andrew M; Yetisgen, Meliha; O'Reilly-Shah, Vikas N.
Affiliation
  • Chung P; Department of Anesthesiology & Pain Medicine, University of Washington, 1959 NE Pacific Street, BB-1469, Box 356540, Seattle, WA, 98195-6540, USA. chungph@uw.edu.
  • Fong CT; Department of Anesthesiology & Pain Medicine, University of Washington, 1959 NE Pacific Street, BB-1469, Box 356540, Seattle, WA, 98195-6540, USA.
  • Walters AM; Department of Anesthesiology & Pain Medicine, University of Washington, 1959 NE Pacific Street, BB-1469, Box 356540, Seattle, WA, 98195-6540, USA.
  • Yetisgen M; Department of Biomedical & Health Informatics, University of Washington, 850 Republican Street, Box 358047, Seattle, WA, 98109, USA.
  • O'Reilly-Shah VN; Department of Linguistics, University of Washington, 850 Republican Street, Box 358047, Seattle, WA, 98109, USA.
BMC Anesthesiol ; 23(1): 296, 2023 09 04.
Article in En | MEDLINE | ID: mdl-37667258
BACKGROUND: Electronic health records (EHR) contain large volumes of unstructured free-form text notes that richly describe a patient's health and medical comorbidities. It is unclear if perioperative risk stratification can be performed directly from these notes without manual data extraction. We conduct a feasibility study using natural language processing (NLP) to predict the American Society of Anesthesiologists Physical Status Classification (ASA-PS) as a surrogate measure for perioperative risk. We explore prediction performance using four different model types and compare the use of different note sections versus the whole note. We use Shapley values to explain model predictions and analyze disagreement between model and human anesthesiologist predictions. METHODS: Single-center retrospective cohort analysis of EHR notes from patients undergoing procedures with anesthesia care spanning all procedural specialties during a 5 year period who were not assigned ASA VI and also had a preoperative evaluation note filed within 90 days prior to the procedure. NLP models were trained for each combination of 4 models and 8 text snippets from notes. Model performance was compared using area under the receiver operating characteristic curve (AUROC) and area under the precision recall curve (AUPRC). Shapley values were used to explain model predictions. Error analysis and model explanation using Shapley values was conducted for the best performing model. RESULTS: Final dataset includes 38,566 patients undergoing 61,503 procedures with anesthesia care. Prevalence of ASA-PS was 8.81% for ASA I, 31.4% for ASA II, 43.25% for ASA III, and 16.54% for ASA IV-V. The best performing models were the BioClinicalBERT model on the truncated note task (macro-average AUROC 0.845) and the fastText model on the full note task (macro-average AUROC 0.865). Shapley values reveal human-interpretable model predictions. Error analysis reveals that some original ASA-PS assignments may be incorrect and the model is making a reasonable prediction in these cases. CONCLUSIONS: Text classification models can accurately predict a patient's illness severity using only free-form text descriptions of patients without any manual data extraction. They can be an additional patient safety tool in the perioperative setting and reduce manual chart review for medical billing. Shapley feature attributions produce explanations that logically support model predictions and are understandable to clinicians.
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Anesthesiologists / Anesthesia Type of study: Guideline / Observational_studies / Prognostic_studies / Risk_factors_studies Limits: Humans Country/Region as subject: America do norte Language: En Journal: BMC Anesthesiol Year: 2023 Document type: Article Affiliation country: United States Country of publication: United kingdom

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Anesthesiologists / Anesthesia Type of study: Guideline / Observational_studies / Prognostic_studies / Risk_factors_studies Limits: Humans Country/Region as subject: America do norte Language: En Journal: BMC Anesthesiol Year: 2023 Document type: Article Affiliation country: United States Country of publication: United kingdom