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Data-driven distillation and precision prognosis in traumatic brain injury with interpretable machine learning.
Tritt, Andrew; Yue, John K; Ferguson, Adam R; Torres Espin, Abel; Nelson, Lindsay D; Yuh, Esther L; Markowitz, Amy J; Manley, Geoffrey T; Bouchard, Kristofer E.
Affiliation
  • Tritt A; Applied Math and Computational Research Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
  • Yue JK; Brain and Spinal Injury Center, Zuckerberg San Francisco General Hospital and Trauma Center, San Francisco, CA, USA.
  • Ferguson AR; Department of Neurosurgery, Weill Institute for Neurosciences, University of California San Francisco, San Francisco, CA, USA.
  • Torres Espin A; Brain and Spinal Injury Center, Zuckerberg San Francisco General Hospital and Trauma Center, San Francisco, CA, USA.
  • Nelson LD; Department of Neurosurgery, Weill Institute for Neurosciences, University of California San Francisco, San Francisco, CA, USA.
  • Yuh EL; San Francisco Veterans Affairs Healthcare System, San Francisco, CA, USA.
  • Markowitz AJ; Brain and Spinal Injury Center, Zuckerberg San Francisco General Hospital and Trauma Center, San Francisco, CA, USA.
  • Manley GT; Department of Neurosurgery, Weill Institute for Neurosciences, University of California San Francisco, San Francisco, CA, USA.
  • Bouchard KE; Departments of Neurosurgery and Neurology, Medical College of Wisconsin, Milwaukee, WI, USA.
Sci Rep ; 13(1): 21200, 2023 12 01.
Article in En | MEDLINE | ID: mdl-38040784
Traumatic brain injury (TBI) affects how the brain functions in the short and long term. Resulting patient outcomes across physical, cognitive, and psychological domains are complex and often difficult to predict. Major challenges to developing personalized treatment for TBI include distilling large quantities of complex data and increasing the precision with which patient outcome prediction (prognoses) can be rendered. We developed and applied interpretable machine learning methods to TBI patient data. We show that complex data describing TBI patients' intake characteristics and outcome phenotypes can be distilled to smaller sets of clinically interpretable latent factors. We demonstrate that 19 clusters of TBI outcomes can be predicted from intake data, a ~ 6× improvement in precision over clinical standards. Finally, we show that 36% of the outcome variance across patients can be predicted. These results demonstrate the importance of interpretable machine learning applied to deeply characterized patients for data-driven distillation and precision prognosis.
Subject(s)

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Distillation / Brain Injuries, Traumatic Limits: Humans Language: En Journal: Sci Rep Year: 2023 Document type: Article Affiliation country: United States Country of publication: United kingdom

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Distillation / Brain Injuries, Traumatic Limits: Humans Language: En Journal: Sci Rep Year: 2023 Document type: Article Affiliation country: United States Country of publication: United kingdom