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The first chromosome-level genome of the stag beetle Dorcus hopei Saunders, 1854 (Coleoptera: Lucanidae).
Li, Xiaolu; Mao, Chuyang; He, Jinwu; Bin, Xiaoyan; Liu, Guichun; Dong, Zhiwei; Zhao, Ruoping; Wan, Xia; Li, Xueyan.
Affiliation
  • Li X; Department of Ecology, School of Resources and Environmental Engineering, Anhui University, Hefei, 230601, China.
  • Mao C; Key Laboratory of Genetic Evolution & Animal Models, Kunming Institute of Zoology, Chinese Academy of Sciences (CAS), Kunming, Yunnan, 650223, China.
  • He J; Yunnan Key Laboratory of Biodiversity Information, Kunming, Yunnan, 650223, China.
  • Bin X; Key Laboratory of Genetic Evolution & Animal Models, Kunming Institute of Zoology, Chinese Academy of Sciences (CAS), Kunming, Yunnan, 650223, China.
  • Liu G; Yunnan Key Laboratory of Biodiversity Information, Kunming, Yunnan, 650223, China.
  • Dong Z; Department of Ecology, School of Resources and Environmental Engineering, Anhui University, Hefei, 230601, China.
  • Zhao R; Key Laboratory of Genetic Evolution & Animal Models, Kunming Institute of Zoology, Chinese Academy of Sciences (CAS), Kunming, Yunnan, 650223, China.
  • Wan X; Yunnan Key Laboratory of Biodiversity Information, Kunming, Yunnan, 650223, China.
  • Li X; Key Laboratory of Genetic Evolution & Animal Models, Kunming Institute of Zoology, Chinese Academy of Sciences (CAS), Kunming, Yunnan, 650223, China.
Sci Data ; 11(1): 396, 2024 Apr 18.
Article in En | MEDLINE | ID: mdl-38637640
ABSTRACT
Stag beetles (Coleoptera Lucanidae) represent a significant saproxylic assemblage in forest ecosystems and are noted for their enlarged mandibles and male polymorphism. Despite their relevance as ideal models for the study of exaggerated mandibles that aid in attracting mates, the regulatory mechanisms associated with these traits remain understudied, and restricted by the lack of high-quality reference genomes for stag beetles. To address this limitation, we successfully assembled the first chromosome-level genome of a representative species Dorcus hopei. The genome was 496.58 Mb in length, with a scaffold N50 size of 54.61 Mb, BUSCO values of 99.8%, and 96.8% of scaffolds anchored to nine pairs of chromosomes. We identified 285.27 Mb (57.45%) of repeat sequences and annotated 11,231 protein-coding genes. This genome will be a valuable resource for further understanding the evolution and ecology of stag beetles, and provides a basis for studying the mechanisms of exaggerated mandibles through comparative analysis.
Subject(s)

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Coleoptera / Genome, Insect Limits: Animals Language: En Journal: Sci Data Year: 2024 Document type: Article Affiliation country: China Country of publication: United kingdom

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Coleoptera / Genome, Insect Limits: Animals Language: En Journal: Sci Data Year: 2024 Document type: Article Affiliation country: China Country of publication: United kingdom