Your browser doesn't support javascript.
loading
The reference genome of Macropodus opercularis (the paradise fish).
Fodor, Erika; Okendo, Javan; Szabó, Nóra; Szabó, Kata; Czimer, Dávid; Tarján-Rácz, Anita; Szeverényi, Ildikó; Low, Bi Wei; Liew, Jia Huan; Koren, Sergey; Rhie, Arang; Orbán, László; Miklósi, Ádám; Varga, Máté; Burgess, Shawn M.
Affiliation
  • Fodor E; Department of Genetics, ELTE Eötvös Loránd University, Budapest, Hungary.
  • Okendo J; Translational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD, USA.
  • Szabó N; Department of Genetics, ELTE Eötvös Loránd University, Budapest, Hungary.
  • Szabó K; Department of Genetics, ELTE Eötvös Loránd University, Budapest, Hungary.
  • Czimer D; Department of Genetics, ELTE Eötvös Loránd University, Budapest, Hungary.
  • Tarján-Rácz A; Department of Genetics, ELTE Eötvös Loránd University, Budapest, Hungary.
  • Szeverényi I; Frontline Fish Genomics Research Group, Department of Applied Fish Biology, Institute of Aquaculture and Environmental Safety, Hungarian University of Agriculture and Life Sciences, Georgikon Campus, Keszthely, Hungary.
  • Low BW; Science Unit, Lingnan University, Hong Kong, China.
  • Liew JH; Science Unit, Lingnan University, Hong Kong, China.
  • Koren S; Computational and Statistical Genomics Branch, National Human Genome Research Institute, Bethesda, MD, USA.
  • Rhie A; Computational and Statistical Genomics Branch, National Human Genome Research Institute, Bethesda, MD, USA.
  • Orbán L; Frontline Fish Genomics Research Group, Department of Applied Fish Biology, Institute of Aquaculture and Environmental Safety, Hungarian University of Agriculture and Life Sciences, Georgikon Campus, Keszthely, Hungary.
  • Miklósi Á; Department of Ethology, ELTE Eötvös Loránd University, Budapest, Hungary.
  • Varga M; Department of Genetics, ELTE Eötvös Loránd University, Budapest, Hungary. mvarga@ttk.elte.hu.
  • Burgess SM; Translational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD, USA. burgess@mail.nih.gov.
Sci Data ; 11(1): 540, 2024 May 25.
Article in En | MEDLINE | ID: mdl-38796485
ABSTRACT
Amongst fishes, zebrafish (Danio rerio) has gained popularity as a model system over most other species and while their value as a model is well documented, their usefulness is limited in certain fields of research such as behavior. By embracing other, less conventional experimental organisms, opportunities arise to gain broader insights into evolution and development, as well as studying behavioral aspects not available in current popular model systems. The anabantoid paradise fish (Macropodus opercularis), an "air-breather" species has a highly complex behavioral repertoire and has been the subject of many ethological investigations but lacks genomic resources. Here we report the reference genome assembly of M. opercularis using long-read sequences at 150-fold coverage. The final assembly consisted of 483,077,705 base pairs (~483 Mb) on 152 contigs. Within the assembled genome we identified and annotated 20,157 protein coding genes and assigned ~90% of them to orthogroups.
Subject(s)
Fulltext
Add to My VHL
Print
XML
PubMed Links
Search on Google

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Genome / Fishes Limits: Animals Language: En Journal: Sci Data Year: 2024 Document type: Article Affiliation country: Hungary
Fulltext
Add to My VHL
Print
XML
PubMed Links
Search on Google

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Genome / Fishes Limits: Animals Language: En Journal: Sci Data Year: 2024 Document type: Article Affiliation country: Hungary