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The genome sequences of the marine diatom Epithemia pelagica strain UHM3201 (Schvarcz, Stancheva & Steward, 2022) and its nitrogen-fixing, endosymbiotic cyanobacterium.
Schvarcz, Christopher R; Stancheva, Rosalina; Turk-Kubo, Kendra A; Wilson, Samuel T; Zehr, Jonathan P; Edwards, Kyle F; Steward, Grieg F; Archibald, John M; Oatley, Graeme; Sinclair, Elizabeth; Santos, Camilla; Paulini, Michael; Aunin, Eerik; Gettle, Noah; Niu, Haoyu; McKenna, Victoria; O'Brien, Rebecca.
Affiliation
  • Schvarcz CR; Department of Oceanography, Daniel K. Inouye Center for Microbial Oceanography: Research and Education (C-MORE), University of Hawai'i at Manoa, Honolulu, Hawaii, USA.
  • Stancheva R; Department of Environmental Science and Policy, George Mason University, Fairfax, Virginia, USA.
  • Turk-Kubo KA; Department of Ocean Sciences, University of California Santa Cruz, Santa Cruz, California, USA.
  • Wilson ST; School of Natural & Environmental Sciences, Newcastle University, Newcastle upon Tyne, England, UK.
  • Zehr JP; Department of Ocean Sciences, University of California Santa Cruz, Santa Cruz, California, USA.
  • Edwards KF; Department of Oceanography, Daniel K. Inouye Center for Microbial Oceanography: Research and Education (C-MORE), University of Hawai'i at Manoa, Honolulu, Hawaii, USA.
  • Steward GF; Department of Oceanography, Daniel K. Inouye Center for Microbial Oceanography: Research and Education (C-MORE), University of Hawai'i at Manoa, Honolulu, Hawaii, USA.
  • Archibald JM; Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada.
  • Oatley G; Tree of Life, Wellcome Sanger Institute, Hinxton, England, UK.
  • Sinclair E; Tree of Life, Wellcome Sanger Institute, Hinxton, England, UK.
  • Santos C; Tree of Life, Wellcome Sanger Institute, Hinxton, England, UK.
  • Paulini M; Tree of Life, Wellcome Sanger Institute, Hinxton, England, UK.
  • Aunin E; Tree of Life, Wellcome Sanger Institute, Hinxton, England, UK.
  • Gettle N; Tree of Life, Wellcome Sanger Institute, Hinxton, England, UK.
  • Niu H; Tree of Life, Wellcome Sanger Institute, Hinxton, England, UK.
  • McKenna V; Tree of Life, Wellcome Sanger Institute, Hinxton, England, UK.
  • O'Brien R; Tree of Life, Wellcome Sanger Institute, Hinxton, England, UK.
Wellcome Open Res ; 9: 232, 2024.
Article in En | MEDLINE | ID: mdl-38867757
ABSTRACT
We present the genome assembly of the pennate diatom Epithemia pelagica strain UHM3201 (Ochrophyta; Bacillariophyceae; Rhopalodiales; Rhopalodiaceae) and that of its cyanobacterial endosymbiont (Chroococcales Aphanothecaceae). The genome sequence of the diatom is 60.3 megabases in span, and the cyanobacterial genome has a length of 2.48 megabases. Most of the diatom nuclear genome assembly is scaffolded into 15 chromosomal pseudomolecules. The organelle genomes have also been assembled, with the mitochondrial genome 40.08 kilobases and the plastid genome 130.75 kilobases in length. A number of other prokaryote MAGs were also assembled.
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Full text: 1 Collection: 01-internacional Database: MEDLINE Language: En Journal: Wellcome Open Res Year: 2024 Document type: Article Affiliation country: United States Country of publication: United kingdom
Fulltext
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Full text: 1 Collection: 01-internacional Database: MEDLINE Language: En Journal: Wellcome Open Res Year: 2024 Document type: Article Affiliation country: United States Country of publication: United kingdom