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E. coli do not count single molecules.
Mattingly, Henry H; Kamino, Keita; Ong, Jude; Kottou, Rafaela; Emonet, Thierry; Machta, Benjamin B.
Affiliation
  • Mattingly HH; Center for Computational Biology, Flatiron Institute.
  • Kamino K; Institute of Molecular Biology, Academia Sinica.
  • Ong J; Molecular, Cellular, and Developmental Biology, Yale University.
  • Kottou R; Molecular, Cellular, and Developmental Biology, Yale University.
  • Emonet T; Molecular, Cellular, and Developmental Biology, Yale University.
  • Machta BB; Physics, Yale University.
bioRxiv ; 2024 Jul 13.
Article in En | MEDLINE | ID: mdl-39026702
ABSTRACT
Organisms must perform sensory-motor behaviors to survive. What bounds or constraints limit behavioral performance? Previously, we found that the gradient-climbing speed of a chemotaxing Escherichia coli is near a bound set by the limited information they acquire from their chemical environments (1). Here we ask what limits their sensory accuracy. Past theoretical analyses have shown that the stochasticity of single molecule arrivals sets a fundamental limit on the precision of chemical sensing (2). Although it has been argued that bacteria approach this limit, direct evidence is lacking. Here, using information theory and quantitative experiments, we find that E. coli's chemosensing is not limited by the physics of particle counting. First, we derive the physical limit on the behaviorally-relevant information that any sensor can get about a changing chemical concentration, assuming that every molecule arriving at the sensor is recorded. Then, we derive and measure how much information E. coli's signaling pathway encodes during chemotaxis. We find that E. coli encode two orders of magnitude less information than an ideal sensor limited only by shot noise in particle arrivals. These results strongly suggest that constraints other than particle arrival noise limit E. coli's sensory fidelity.

Full text: 1 Collection: 01-internacional Database: MEDLINE Language: En Journal: BioRxiv Year: 2024 Document type: Article Country of publication: EEUU / ESTADOS UNIDOS / ESTADOS UNIDOS DA AMERICA / EUA / UNITED STATES / UNITED STATES OF AMERICA / US / USA

Full text: 1 Collection: 01-internacional Database: MEDLINE Language: En Journal: BioRxiv Year: 2024 Document type: Article Country of publication: EEUU / ESTADOS UNIDOS / ESTADOS UNIDOS DA AMERICA / EUA / UNITED STATES / UNITED STATES OF AMERICA / US / USA