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Origin of Secondary Structure Transitions and Peptide Self-Assembly Propensity in Trifluoroethanol-Water Mixtures.
Prasad, Anup Kumar; Samajdar, Rajarshi; Panwar, Ajay Singh; Martin, Lisandra L.
Affiliation
  • Prasad AK; IITB-Monash Research Academy, Indian Institute of Technology Bombay, Mumbai 400076, India.
  • Samajdar R; Department of Metallurgical Engineering & Materials Science, Indian Institute of Technology Bombay, Mumbai 400076, India.
  • Panwar AS; School of Chemistry, Monash University, Clayton 3800, VIC, Australia.
  • Martin LL; Department of Chemical Engineering, Institute of Chemical Technology, Mumbai 400019, India.
J Phys Chem B ; 128(32): 7736-7749, 2024 Aug 15.
Article in En | MEDLINE | ID: mdl-39088441
ABSTRACT
Membrane-peptide interactions are key to the formation of helical intermediates in the early stages of amyloidogenesis. Aqueous solutions of 2,2,2-trifluoroethanol (TFE) provide a membrane-mimetic environment capable of promoting and stabilizing local peptide interactions. Uperin 3.5 (U3.5), a 17-residue and amidated antimicrobial peptide, is unstructured in water but self-assembles into fibrils in the presence of salt. Secondary structure transitions linked to U3.5 self-assembly were investigated in TFE/water mixtures, in both the absence and presence of salt, to assess the role of membrane-peptide interactions on peptide self-assembly and amyloid formation. A 5-to-7-fold increase in fibril yield of U3.5 was observed at low TFE concentrations (10% TFE/water v/v) compared with physiological buffer but only in the presence of salt. No aggregation was observed in salt-free TFE/water mixtures. Circular dichroism spectra showed that partial helical structures, initially stabilized by TFE, transitioned to ß-sheet-rich aggregates in a saline buffer. Molecular dynamics simulations confirmed that TFE and salt act synergistically to enhance peptide-peptide interactions, resulting in ß-sheet-rich U3.5 oligomers at low TFE concentrations. Specifically, TFE stabilized amphipathic, helical intermediates, leading to increased peptide-peptide attraction through hydrophobic interactions. The presence of salt further enhanced the peptide-peptide interactions by screening positively charged residues. Thus, the study revealed the role of a membrane mimic in stabilizing helical intermediates on the pathway to amyloid formation in the antimicrobial U3.5 peptide.
Subject(s)

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Trifluoroethanol / Water / Protein Structure, Secondary Language: En Journal: J Phys Chem B Journal subject: QUIMICA Year: 2024 Document type: Article Affiliation country: India Country of publication: United States

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Trifluoroethanol / Water / Protein Structure, Secondary Language: En Journal: J Phys Chem B Journal subject: QUIMICA Year: 2024 Document type: Article Affiliation country: India Country of publication: United States