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Adapting the rhizome concept to an extended definition of viral quasispecies and the implications for molecular evolution.
Landa, Carlos Raico; Ariza-Mateos, Ascensión; Briones, Carlos; Perales, Celia; Wagner, Astrid; Domingo, Esteban; Gómez, Jordi.
Affiliation
  • Landa CR; Laboratory of RNA Archaeology, Instituto de Parasitología y Biomedicina "López-Neyra" (CSIC), Avd. Conocimiento 17, 18016, Armilla, Granada, Spain.
  • Ariza-Mateos A; Laboratory of RNA Archaeology, Instituto de Parasitología y Biomedicina "López-Neyra" (CSIC), Avd. Conocimiento 17, 18016, Armilla, Granada, Spain.
  • Briones C; Centro de Biología Molecular "Severo Ochoa" (CSIC-UAM), Campus de Cantoblanco, Madrid, Spain.
  • Perales C; Department of Molecular Evolution, Centro de Astrobiología (CSIC-INTA), Madrid, Spain.
  • Wagner A; Centro Nacional de Biotecnología (CNB-CSIC), Campus de Cantoblanco, Madrid, Spain.
  • Domingo E; Department of Clinical Microbiology, IIS-Fundación Jiménez Díaz, UAM, Madrid, Spain.
  • Gómez J; Instituto de Filosofía del CSIC, Madrid, Spain.
Sci Rep ; 14(1): 17914, 2024 08 02.
Article in En | MEDLINE | ID: mdl-39095425
ABSTRACT
The rhizome concept proposed by Gilles Deleuze and Félix Guattari offers a novel perspective on the organization and interdependence of complex constellations of heterogeneous entities, their mapping and their ruptures. The emphasis of the present study is placed on the dynamics of contacts and communication among such entities that arise from experimentation, without any favored hierarchy or origin. When applied to biological evolution, the rhizome concept integrates all types of heterogeneity resulting from "symbiotic" relationships among living beings (or their genomic material), horizontal genetic transfer, recombination and mutation, and breaks away from the approach that gives rise to the phylogenetic tree of life. It has already been applied to describe the dynamics and evolution of RNA viruses. Thus, here we introduce a novel framework for the interpretation the viral quasispecies concept, which explains the evolution of RNA virus populations as the result of dynamic interconnections and multifaceted interdependence between highly heterogeneous viral sequences and its inherently heterogeneous host cells. The rhizome network perspective underlines even further the medical implications of the broad mutant spectra of viruses that are in constant flow, given the multiple pathways they have available for fitness loss and gain.
Subject(s)

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Phylogeny / Evolution, Molecular / Rhizome / Quasispecies Language: En Journal: Sci Rep Year: 2024 Document type: Article Affiliation country: Spain Country of publication: United kingdom

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Phylogeny / Evolution, Molecular / Rhizome / Quasispecies Language: En Journal: Sci Rep Year: 2024 Document type: Article Affiliation country: Spain Country of publication: United kingdom