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A complete genome assembly of Glaciecola mesophila sp. nov. sequenced by using BIGIS-4 sequencer system.
Yuan, Lina; Ren, Lufeng; Li, Yuntao; Han, Weijing; Yu, Yong; Chu, Yanan; Liu, Guiming; Yu, Dan; Teng, Mingjing; Wang, Liang; Wang, Xumin; Zhou, Xiaoguang; Yu, Yude; Yu, Jun.
Afiliación
  • Yuan L; Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100029, China.
Sci China Life Sci ; 54(9): 835-40, 2011 Sep.
Article en En | MEDLINE | ID: mdl-21809037
Using a pyrosequencing-based custom-made sequencer BIGIS-4, we sequenced a Gram-negative bacterium Glaciecola mesophila sp. nov. (Gmn) isolated from marine invertebrate specimens. We generated 152043 sequencing reads with a mean high-quality length of 406 bp, and assembled them using the BIGIS-4 post-processing module. No systematic low-quality data was detected beyond expected homopolymer-derived errors. The assembled Gmn genome is 5144318 bp in length and harbors 4303 annotated genes. A large number of metabolic genes correspond to various nutrients from surface marine invertebrates. Its abundant cold-tolerant and cellular signaling and related genes reveal a fundamental adaptation to low-temperature marine environment.
Asunto(s)

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Genoma Bacteriano / Bacterias Gramnegativas Idioma: En Revista: Sci China Life Sci Asunto de la revista: BIOLOGIA / CIENCIA Año: 2011 Tipo del documento: Article País de afiliación: China Pais de publicación: China

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Genoma Bacteriano / Bacterias Gramnegativas Idioma: En Revista: Sci China Life Sci Asunto de la revista: BIOLOGIA / CIENCIA Año: 2011 Tipo del documento: Article País de afiliación: China Pais de publicación: China