Application of in-house virtual protein database performed in genomic-proteomic combined research on heavy-metal stressed onion roots.
Biotechnol Lett
; 38(8): 1293-300, 2016 Aug.
Article
en En
| MEDLINE
| ID: mdl-27154469
ABSTRACT
OBJECTIVES:
To establish an in-house virtual protein database that can be employed in proteomic research on non-model plants.RESULTS:
A total of 87,430 unigenes were obtained through transcriptome sequencing from onion roots. Of these, 24,305 unigenes were annotated and their nucleotide sequences of coding regions were translated into amino acid sequences. The corresponding 24,305 amino acid sequences were considered as an in-house virtual protein database. Thirty-two protein spots with significant differential abundance were selected. Their MS data were submitted to a restriction enzyme map which was converted from the in-house virtual protein database. A total of 27 proteins were finally matched.CONCLUSIONS:
The in-house protein database is a feasible and innovative strategy for proteomic research on non-model plants.Palabras clave
Texto completo:
1
Colección:
01-internacional
Base de datos:
MEDLINE
Asunto principal:
Raíces de Plantas
/
Metales Pesados
/
Cebollas
/
Genómica
/
Bases de Datos de Proteínas
/
Proteómica
Idioma:
En
Revista:
Biotechnol Lett
Año:
2016
Tipo del documento:
Article
País de afiliación:
China