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In silico Exploration of the Conformational Universe of GPCRs.
Rodríguez-Espigares, Ismael; Kaczor, Agnieszka A; Selent, Jana.
Afiliación
  • Rodríguez-Espigares I; Pharmacoinformatics group, Research Programme on Biomedical Informatics (GRIB), Universitat Pompeu Fabra (UPF)-Hospital del Mar Medical Research Institute (IMIM), Parc de Recerca Biomèdica de Barcelona (PRBB), Dr. Aiguader, 88, 08003, Barcelona, Spain.
  • Kaczor AA; Department of Synthesis and Chemical Technology of Pharmaceutical Substances with Computer Modeling Lab, Faculty of Pharmacy with Division for Medical Analytics, Medical University of Lublin, 4A Chodzki St., PL-20059, Lublin, Poland.
  • Selent J; School of Pharmacy, University of Eastern Finland, Yliopistonranta 1, P.O. Box 1627, FI-70211, Kuopio, Finland.
Mol Inform ; 35(6-7): 227-37, 2016 07.
Article en En | MEDLINE | ID: mdl-27492237
The structural plasticity of G protein coupled receptors (GPCRs) leads to a conformational universe going from inactive to active receptor states with several intermediate states. Many of them have not been captured yet and their role for GPCR activation is not well understood. The study of this conformational space and the transition dynamics between different receptor populations is a major challenge in molecular biophysics. The rational design of effector molecules that target such receptor populations allows fine-tuning receptor signalling with higher specificity to produce drugs with safer therapeutic profiles. In this minireview, we outline highly conserved receptor regions which are considered determinant for the establishment of distinct receptor states. We then discuss in-silico approaches such as dimensionality reduction methods and Markov State Models to explore the GPCR conformational universe and exploit the obtained conformations through structure-based drug design.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Receptores Acoplados a Proteínas G / Simulación de Dinámica Molecular Límite: Humans Idioma: En Revista: Mol Inform Año: 2016 Tipo del documento: Article País de afiliación: España Pais de publicación: Alemania

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Receptores Acoplados a Proteínas G / Simulación de Dinámica Molecular Límite: Humans Idioma: En Revista: Mol Inform Año: 2016 Tipo del documento: Article País de afiliación: España Pais de publicación: Alemania