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New tools and functions in data-out activities at Protein Data Bank Japan (PDBj).
Kinjo, Akira R; Bekker, Gert-Jan; Wako, Hiroshi; Endo, Shigeru; Tsuchiya, Yuko; Sato, Hiromu; Nishi, Hafumi; Kinoshita, Kengo; Suzuki, Hirofumi; Kawabata, Takeshi; Yokochi, Masashi; Iwata, Takeshi; Kobayashi, Naohiro; Fujiwara, Toshimichi; Kurisu, Genji; Nakamura, Haruki.
Afiliación
  • Kinjo AR; Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka, 565-0871, Japan.
  • Bekker GJ; Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka, 565-0871, Japan.
  • Wako H; School of Social Sciences, Waseda University, 1-6-1 Nishi-Waseda, Shinjuku-ku, Tokyo, 169-8050, Japan.
  • Endo S; School of Science, Kitasato University, 1-15-1, Kitasato, Minami-ku, Sagamihara, Kanagawa, 252-0373, Japan.
  • Tsuchiya Y; Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka, 565-0871, Japan.
  • Sato H; Graduate School of Information Sciences, Tohoku University, 6-3-09 Aoba, Aramaki-aza Aoba-ku, Sendai, 980-8579, Japan.
  • Nishi H; Graduate School of Information Sciences, Tohoku University, 6-3-09 Aoba, Aramaki-aza Aoba-ku, Sendai, 980-8579, Japan.
  • Kinoshita K; Graduate School of Information Sciences, Tohoku University, 6-3-09 Aoba, Aramaki-aza Aoba-ku, Sendai, 980-8579, Japan.
  • Suzuki H; Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka, 565-0871, Japan.
  • Kawabata T; Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka, 565-0871, Japan.
  • Yokochi M; Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka, 565-0871, Japan.
  • Iwata T; Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka, 565-0871, Japan.
  • Kobayashi N; Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka, 565-0871, Japan.
  • Fujiwara T; Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka, 565-0871, Japan.
  • Kurisu G; Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka, 565-0871, Japan.
  • Nakamura H; Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka, 565-0871, Japan.
Protein Sci ; 27(1): 95-102, 2018 01.
Article en En | MEDLINE | ID: mdl-28815765
ABSTRACT
The Protein Data Bank Japan (PDBj), a member of the worldwide Protein Data Bank (wwPDB), accepts and processes the deposited data of experimentally determined biological macromolecular structures. In addition to archiving the PDB data in collaboration with the other wwPDB partners, PDBj also provides a wide range of original and unique services and tools, which are continuously improved and updated. Here, we report the new RDB PDBj Mine 2, the WebGL molecular viewer Molmil, the ProMode-Elastic server for normal mode analysis, a virtual reality system for the eF-site protein electrostatic molecular surfaces, the extensions of the Omokage search for molecular shape similarity, and the integration of PDBj and BMRB searches.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Interfaz Usuario-Computador / Modelos Moleculares / Bases de Datos de Proteínas / Realidad Virtual País/Región como asunto: Asia Idioma: En Revista: Protein Sci Asunto de la revista: BIOQUIMICA Año: 2018 Tipo del documento: Article País de afiliación: Japón
Texto completo
Añadir a Mi BVS
Imprimir
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PubMed Links
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Interfaz Usuario-Computador / Modelos Moleculares / Bases de Datos de Proteínas / Realidad Virtual País/Región como asunto: Asia Idioma: En Revista: Protein Sci Asunto de la revista: BIOQUIMICA Año: 2018 Tipo del documento: Article País de afiliación: Japón