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Datasets for genome assembly of six underutilized Indonesian fruits.
Matra, Deden Derajat; Ritonga, Arya Widura; Natawijaya, Azis; Poerwanto, Roedhy; Siregar, Ulfah Juniarti; Widodo, Winarso Drajad; Inoue, Eiichi.
Afiliación
  • Matra DD; Department of Agronomy and Horticulture, Faculty of Agriculture, Bogor Agricultural University, Indonesia.
  • Ritonga AW; Department of Agronomy and Horticulture, Faculty of Agriculture, Bogor Agricultural University, Indonesia.
  • Natawijaya A; Research and Development Division, Mekarsari Fruit Garden, Indonesia.
  • Poerwanto R; Department of Agronomy and Horticulture, Faculty of Agriculture, Bogor Agricultural University, Indonesia.
  • Sobir; Department of Agronomy and Horticulture, Faculty of Agriculture, Bogor Agricultural University, Indonesia.
  • Siregar UJ; Department of Silviculture, Faculty of Forestry, Bogor Agricultural University, Indonesia.
  • Widodo WD; Department of Agronomy and Horticulture, Faculty of Agriculture, Bogor Agricultural University, Indonesia.
  • Inoue E; College of Agriculture, Ibaraki University, Japan.
Data Brief ; 22: 960-963, 2019 Feb.
Article en En | MEDLINE | ID: mdl-30740478
ABSTRACT
Indonesia has a high genetic diversity of tropical fruits. However, studies on genomics are still very limited. In this data article, six underutilized Indonesian fruits were analyzed for the estimated genome size and partial data of genome assembly including Artocarpus nangkadak (Artocarpus heterophyllus x Artocarpus integer), Salacca sumatrana, Flacourtia inermis, Lansium domesticum, Pometia pinnata, and Syzygium samarangense. These genome data may be used to construct molecular markers for plant systematics and breeding program of these species. Our genome data were sequenced paired-end libraries using BGISeq-500 and generated approximately 5 Gb of bases per species. The raw sequences have been deposited in the DNA Data Bank of Japan (DDBJ) under the DDBJ BioProject umbrella with accession number PRJDB7265 and to the DDBJ Read Archive for each species following Artocarpus nangkadak (DRA007398), Salacca sumatrana (DRA007394), Flacourtia inermis (DRA007395), Lansium domesticum (DRA007393), Pometia pinnata (DRA007396), Syzygium samarangense (DRA007397).

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Idioma: En Revista: Data Brief Año: 2019 Tipo del documento: Article País de afiliación: Indonesia

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Idioma: En Revista: Data Brief Año: 2019 Tipo del documento: Article País de afiliación: Indonesia