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rDolphin: a GUI R package for proficient automatic profiling of 1D 1H-NMR spectra of study datasets.
Cañueto, Daniel; Gómez, Josep; Salek, Reza M; Correig, Xavier; Cañellas, Nicolau.
Afiliación
  • Cañueto D; Metabolomics Platform, IISPV, DEEEA, Universitat Rovira i Virgili, Campus Sescelades, Carretera de Valls, s/n, 43007, Tarragona, Spain. danielcanueto88@gmail.com.
  • Gómez J; Intensive Care Unit, Joan XXIII University Hospital, IISPV, Carrer Dr. Mallafrè Guasch, 4, 43005, Tarragona, Spain.
  • Salek RM; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge, CB10 1SD, UK.
  • Correig X; Metabolomics Platform, IISPV, DEEEA, Universitat Rovira i Virgili, Campus Sescelades, Carretera de Valls, s/n, 43007, Tarragona, Spain.
  • Cañellas N; CIBERDEM, Spanish Biomedical Research Centre in Diabetes and Associated Metabolic Disorders, 28029, Madrid, Spain.
Metabolomics ; 14(3): 24, 2018 01 31.
Article en En | MEDLINE | ID: mdl-30830320
ABSTRACT

INTRODUCTION:

Adoption of automatic profiling tools for 1H-NMR-based metabolomic studies still lags behind other approaches in the absence of the flexibility and interactivity necessary to adapt to the properties of study data sets of complex matrices.

OBJECTIVES:

To provide an open source tool that fully integrates these needs and enables the reproducibility of the profiling process.

METHODS:

rDolphin incorporates novel techniques to optimize exploratory analysis, metabolite identification, and validation of profiling output quality.

RESULTS:

The information and quality achieved in two public datasets of complex matrices are maximized.

CONCLUSION:

rDolphin is an open-source R package ( http//github.com/danielcanueto/rDolphin ) able to provide the best balance between accuracy, reproducibility and ease of use.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Programas Informáticos / Metabolómica / Espectroscopía de Protones por Resonancia Magnética Tipo de estudio: Prognostic_studies Límite: Humans Idioma: En Revista: Metabolomics Año: 2018 Tipo del documento: Article País de afiliación: España

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Programas Informáticos / Metabolómica / Espectroscopía de Protones por Resonancia Magnética Tipo de estudio: Prognostic_studies Límite: Humans Idioma: En Revista: Metabolomics Año: 2018 Tipo del documento: Article País de afiliación: España
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