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Enrichment technique to allow early detection and monitor emergence of KRAS mutation in response to treatment.
Kitagawa, Yoshiyasu; Okumura, Kazuhiro; Watanabe, Takayoshi; Tsukamoto, Kei; Kitano, Shiro; Nankinzan, Rino; Suzuki, Takuto; Hara, Taro; Soda, Hiroaki; Denda, Tadamichi; Yamaguchi, Taketo; Nagase, Hiroki.
Afiliación
  • Kitagawa Y; Endoscopy Division, Chiba Cancer Center, Chiba, Japan.
  • Okumura K; Division of Oncogenomics, Chiba Cancer Center, Chiba, Japan.
  • Watanabe T; Division of Oncogenomics, Chiba Cancer Center, Chiba, Japan.
  • Tsukamoto K; Division of Cancer Genetics, Chiba Cancer Center, Chiba, Japan.
  • Kitano S; Technical Research Institute, TOPPAN PRINTING CO., LTD, Saitama, Japan.
  • Nankinzan R; Technical Research Institute, TOPPAN PRINTING CO., LTD, Saitama, Japan.
  • Suzuki T; Joint Research Laboratory (TOPPAN) for Advanced Cell Regulatory Chemistry, Graduate School of Engineering, Osaka University, Osaka, Japan.
  • Hara T; Endoscopy Division, Chiba Cancer Center, Chiba, Japan.
  • Soda H; Endoscopy Division, Chiba Cancer Center, Chiba, Japan.
  • Denda T; Hara Clinic, Chiba, Japan.
  • Yamaguchi T; Division of Gastroenterological Surgery, Chiba Cancer Center, Chiba, Japan.
  • Nagase H; Division of Gastroenterology, Chiba Cancer Center, Chiba, Japan.
Sci Rep ; 9(1): 11346, 2019 08 05.
Article en En | MEDLINE | ID: mdl-31383871
Sensitivity of cell-free circulating tumour DNA (ctDNA) assays is often hampered by the limited quantity of intact mutant nucleotide fragments. To overcome the issue of substrate limitation in clinical applications, we developed an enrichment method utilizing pyrrole-imidazole (PI) polyamides and their ability to bind the minor groove of B-DNA. We present here a proof-of-concept experiment to enrich specific mutant KRAS alleles with biotinylated PI polyamides. We investigated the clinical feasibility of incorporating PI polyamides to detect KRAS mutations in ctDNA from 40 colorectal cancer (CRC) patients, of whom 17 carried mutations in KRAS. After enriching ctDNA with those polyamides, we used digital PCR to detect several common KRAS codon 12 mutations. Enrichment by biotinylated PI polyamides improved the sensitivity of ctDNA analysis (88.9% vs. 11.1%, P < 0.01) in 9 non-metastatic mutation-positive patients. We observed no differences in performance for the 8 metastatic subjects (100% vs. 75%, P = 0.47). In the remaining 23/40 patients with wild type KRAS codon 12, no mutant alleles were detected with or without polyamide-facilitated enrichment. Enriching B-form of ctDNA with PI polyamides significantly improved the assay sensitivity in detecting KRAS mutations in non-metastatic CRC patient samples.
Asunto(s)

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Neoplasias Colorrectales / Proteínas Proto-Oncogénicas p21(ras) / Ácidos Nucleicos Libres de Células / ADN Tumoral Circulante Tipo de estudio: Diagnostic_studies / Screening_studies Límite: Adult / Aged / Aged80 / Female / Humans / Male / Middle aged Idioma: En Revista: Sci Rep Año: 2019 Tipo del documento: Article País de afiliación: Japón Pais de publicación: Reino Unido

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Neoplasias Colorrectales / Proteínas Proto-Oncogénicas p21(ras) / Ácidos Nucleicos Libres de Células / ADN Tumoral Circulante Tipo de estudio: Diagnostic_studies / Screening_studies Límite: Adult / Aged / Aged80 / Female / Humans / Male / Middle aged Idioma: En Revista: Sci Rep Año: 2019 Tipo del documento: Article País de afiliación: Japón Pais de publicación: Reino Unido