The role of fluctuations in determining cellular network thermodynamics.

ABSTRACT

The steady state distributions of phenotypic responses within an isogenic population of cells result from both deterministic and stochastic characteristics of biochemical networks. A biochemical network can be characterized by a multidimensional potential landscape based on the distribution of responses and a diffusion matrix of the correlated dynamic fluctuations between N-numbers of intracellular network variables. In this work, we develop a thermodynamic description of biological networks at the level of microscopic interactions between network variables. The Boltzmann H-function defines the rate of free energy dissipation of a network system and provides a framework for determining the heat associated with the nonequilibrium steady state and its network components. The magnitudes of the landscape gradients and the dynamic correlated fluctuations of network variables are experimentally accessible. We describe the use of Fokker-Planck dynamics to calculate housekeeping heat from the experimental data by a method that we refer to as Thermo-FP. The method provides insight into the composition of the network and the relative thermodynamic contributions from network components. We surmise that these thermodynamic quantities allow determination of the relative importance of network components to overall network control. We conjecture that there is an upper limit to the rate of dissipative heat produced by a biological system that is associated with system size or modularity, and we show that the dissipative heat has a lower bound.