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Genome biology of the paleotetraploid perennial biomass crop Miscanthus.
Mitros, Therese; Session, Adam M; James, Brandon T; Wu, Guohong Albert; Belaffif, Mohammad B; Clark, Lindsay V; Shu, Shengqiang; Dong, Hongxu; Barling, Adam; Holmes, Jessica R; Mattick, Jessica E; Bredeson, Jessen V; Liu, Siyao; Farrar, Kerrie; Glowacka, Katarzyna; Jezowski, Stanislaw; Barry, Kerrie; Chae, Won Byoung; Juvik, John A; Gifford, Justin; Oladeinde, Adebosola; Yamada, Toshihiko; Grimwood, Jane; Putnam, Nicholas H; De Vega, Jose; Barth, Susanne; Klaas, Manfred; Hodkinson, Trevor; Li, Laigeng; Jin, Xiaoli; Peng, Junhua; Yu, Chang Yeon; Heo, Kweon; Yoo, Ji Hye; Ghimire, Bimal Kumar; Donnison, Iain S; Schmutz, Jeremy; Hudson, Matthew E; Sacks, Erik J; Moose, Stephen P; Swaminathan, Kankshita; Rokhsar, Daniel S.
Afiliación
  • Mitros T; Department of Molecular and Cell Biology, University of California, Berkeley, CA, 94720, USA.
  • Session AM; DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI), University of Illinois, Urbana-Champaign, IL, 61801, USA.
  • James BT; Department of Molecular and Cell Biology, University of California, Berkeley, CA, 94720, USA.
  • Wu GA; U.S. Department of Energy Joint Genome Institute, Berkeley, CA, 94720, USA.
  • Belaffif MB; DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI), University of Illinois, Urbana-Champaign, IL, 61801, USA.
  • Clark LV; HudsonAlpha Biotechnology Institute, 601 Genome Way Northwest, Huntsville, AL, 35806, USA.
  • Shu S; U.S. Department of Energy Joint Genome Institute, Berkeley, CA, 94720, USA.
  • Dong H; DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI), University of Illinois, Urbana-Champaign, IL, 61801, USA.
  • Barling A; HudsonAlpha Biotechnology Institute, 601 Genome Way Northwest, Huntsville, AL, 35806, USA.
  • Holmes JR; Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA.
  • Mattick JE; High Performance Biological Computing, Roy J. Carver Biotechnology Center, University of Illinois, 206 West Gregory Drive, Urbana, IL, 61801, USA.
  • Bredeson JV; U.S. Department of Energy Joint Genome Institute, Berkeley, CA, 94720, USA.
  • Liu S; Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA.
  • Farrar K; Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA.
  • Glowacka K; Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA.
  • Jezowski S; High Performance Biological Computing, Roy J. Carver Biotechnology Center, University of Illinois, 206 West Gregory Drive, Urbana, IL, 61801, USA.
  • Barry K; Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA.
  • Chae WB; Department of Microbiology and Immunology, Stritch School of Medicine, Loyola University Chicago, Maywood, IL, 60153, USA.
  • Juvik JA; Department of Molecular and Cell Biology, University of California, Berkeley, CA, 94720, USA.
  • Gifford J; Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA.
  • Oladeinde A; Department of Genetics, Curriculum of Bioinformatics and Computational Biology, University of North Carolina, Chapel Hill, NC, 27514, USA.
  • Yamada T; Institute of Biological, Environmental AND Rural Sciences (IBERS), Aberystwyth University, Gogerddan, Aberystwyth, Ceredigion, SY23 3EE, UK.
  • Grimwood J; Institute of Plant Genetics, Polish Academy of Sciences, 60-479, Poznan, Poland.
  • Putnam NH; Department of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA.
  • De Vega J; Institute of Plant Genetics, Polish Academy of Sciences, 60-479, Poznan, Poland.
  • Barth S; U.S. Department of Energy Joint Genome Institute, Berkeley, CA, 94720, USA.
  • Klaas M; Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA.
  • Hodkinson T; Department of Environmental Horticulture, Dankook University, Cheonan, 31116, Republic of Korea.
  • Li L; Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA.
  • Jin X; Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA.
  • Peng J; Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA.
  • Yu CY; Field Science Center for Northern Biosphere, 10-chome-3 Kita 11 Jonishi, Kita-ku, Sapporo, Hokkaido, 060-0811, Japan.
  • Heo K; U.S. Department of Energy Joint Genome Institute, Berkeley, CA, 94720, USA.
  • Yoo JH; HudsonAlpha Biotechnology Institute, 601 Genome Way Northwest, Huntsville, AL, 35806, USA.
  • Ghimire BK; Dovetail Genomics, 100 Enterprise Way, Scotts Valley, CA, 95066, USA.
  • Donnison IS; Earlham Institute, Norwich Research Park Innovation Centre, Norwich, NR4 7UZ, UK.
  • Schmutz J; Teagasc, Crops, Environment and Land Use Programme, Oak Park Research Centre, Carlow, R93XE12, Ireland.
  • Hudson ME; Teagasc, Crops, Environment and Land Use Programme, Oak Park Research Centre, Carlow, R93XE12, Ireland.
  • Sacks EJ; Botany, School of Natural Sciences, Trinity College Dublin, The University of Dublin, D2, Dublin, Ireland.
  • Moose SP; Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, 300 Fenglin Rd, Shanghai, 200032, China.
  • Swaminathan K; Department of Agronomy, Zhejiang University, Hangzhou, 310058, China.
  • Rokhsar DS; HuaZhi Rice Biotech Company, Changsha, 410125, Hunan, China.
Nat Commun ; 11(1): 5442, 2020 10 28.
Article en En | MEDLINE | ID: mdl-33116128
ABSTRACT
Miscanthus is a perennial wild grass that is of global importance for paper production, roofing, horticultural plantings, and an emerging highly productive temperate biomass crop. We report a chromosome-scale assembly of the paleotetraploid M. sinensis genome, providing a resource for Miscanthus that links its chromosomes to the related diploid Sorghum and complex polyploid sugarcanes. The asymmetric distribution of transposons across the two homoeologous subgenomes proves Miscanthus paleo-allotetraploidy and identifies several balanced reciprocal homoeologous exchanges. Analysis of M. sinensis and M. sacchariflorus populations demonstrates extensive interspecific admixture and hybridization, and documents the origin of the highly productive triploid bioenergy crop M. × giganteus. Transcriptional profiling of leaves, stem, and rhizomes over growing seasons provides insight into rhizome development and nutrient recycling, processes critical for sustainable biomass accumulation in a perennial temperate grass. The Miscanthus genome expands the power of comparative genomics to understand traits of importance to Andropogoneae grasses.
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Poaceae Idioma: En Revista: Nat Commun Asunto de la revista: BIOLOGIA / CIENCIA Año: 2020 Tipo del documento: Article País de afiliación: Estados Unidos
Texto completo
Añadir a Mi BVS
Imprimir
XML
PubMed Links
Buscar en Google

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Poaceae Idioma: En Revista: Nat Commun Asunto de la revista: BIOLOGIA / CIENCIA Año: 2020 Tipo del documento: Article País de afiliación: Estados Unidos