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Reporting guidelines for human microbiome research: the STORMS checklist.
Mirzayi, Chloe; Renson, Audrey; Zohra, Fatima; Elsafoury, Shaimaa; Geistlinger, Ludwig; Kasselman, Lora J; Eckenrode, Kelly; van de Wijgert, Janneke; Loughman, Amy; Marques, Francine Z; MacIntyre, David A; Arumugam, Manimozhiyan; Azhar, Rimsha; Beghini, Francesco; Bergstrom, Kirk; Bhatt, Ami; Bisanz, Jordan E; Braun, Jonathan; Bravo, Hector Corrada; Buck, Gregory A; Bushman, Frederic; Casero, David; Clarke, Gerard; Collado, Maria Carmen; Cotter, Paul D; Cryan, John F; Demmer, Ryan T; Devkota, Suzanne; Elinav, Eran; Escobar, Juan S; Fettweis, Jennifer; Finn, Robert D; Fodor, Anthony A; Forslund, Sofia; Franke, Andre; Furlanello, Cesare; Gilbert, Jack; Grice, Elizabeth; Haibe-Kains, Benjamin; Handley, Scott; Herd, Pamela; Holmes, Susan; Jacobs, Jonathan P; Karstens, Lisa; Knight, Rob; Knights, Dan; Koren, Omry; Kwon, Douglas S; Langille, Morgan; Lindsay, Brianna.
Afiliación
  • Mirzayi C; CUNY Graduate School of Public Health and Health Policy, Institute for Implementation Science in Public Health, New York, NY, USA.
  • Renson A; University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
  • Zohra F; CUNY Graduate School of Public Health and Health Policy, Institute for Implementation Science in Public Health, New York, NY, USA.
  • Elsafoury S; CUNY Graduate School of Public Health and Health Policy, Institute for Implementation Science in Public Health, New York, NY, USA.
  • Geistlinger L; CUNY Graduate School of Public Health and Health Policy, Institute for Implementation Science in Public Health, New York, NY, USA.
  • Kasselman LJ; CUNY Graduate School of Public Health and Health Policy, Institute for Implementation Science in Public Health, New York, NY, USA.
  • Eckenrode K; CUNY Graduate School of Public Health and Health Policy, Institute for Implementation Science in Public Health, New York, NY, USA.
  • van de Wijgert J; Julius Center for Health Sciences and Primary Care, University Medical Center Utrecht, Utrecht University, Utrecht, the Netherlands.
  • Loughman A; Food & Mood Centre, The Institute for Mental and Physical Health and Clinical Translation, Deakin University, Geelong, Victoria, Australia.
  • Marques FZ; Hypertension Research Laboratory, School of Biological Sciences, Faculty of Science, Monash University, Melbourne, Victoria, Australia.
  • MacIntyre DA; Department of Metabolism, Digestion and Reproduction, Faculty of Medicine, Imperial College London, London, UK.
  • Arumugam M; Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
  • Azhar R; CUNY Graduate School of Public Health and Health Policy, Institute for Implementation Science in Public Health, New York, NY, USA.
  • Beghini F; Department CIBIO, University of Trento, Trento, Italy.
  • Bergstrom K; Department of Biology, University of British Columbia-Okanagan Campus, Kelowna, British Columbia, Canada.
  • Bhatt A; Division of Hematology and Division of Bone Marrow Transplantation, Department of Medicine, and Department of Genetics, Stanford University, Stanford, CA, USA.
  • Bisanz JE; Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, USA.
  • Braun J; Division of Gastroenterology and Hepatology, Department of Medicine, Cedars-Sinai Medical Center, Los Angeles, CA, USA.
  • Bravo HC; Genentech, South San Francisco, CA, USA.
  • Buck GA; Center for Microbiome Engineering and Data Analysis, Department of Microbiology and Immunology, Virginia Commonwealth University, Richmond, VA, USA.
  • Bushman F; University of Pennsylvania, Philadelphia, PA, USA.
  • Casero D; F. Widjaja Foundation Inflammatory Bowel and Immunobiology Research Institute, Cedars-Sinai Medical Center, Los Angeles, CA, USA.
  • Clarke G; Department of Psychiatry and Neurobehavioural Science, and APC Microbiome Ireland, University College Cork, Cork, Ireland.
  • Collado MC; Institute of Agrochemistry and Food Technology-National Research Council, Valencia, Spain.
  • Cotter PD; Teagasc Food Research Centre-Moorepark, Cork, Ireland.
  • Cryan JF; APC Microbiome Ireland, University College Cork, Cork, Ireland.
  • Demmer RT; VistaMilk, Cork, Ireland.
  • Devkota S; APC Microbiome Ireland, University College Cork, Cork, Ireland.
  • Elinav E; Department of Anatomy and Neuroscience, University College Cork, Cork, Ireland.
  • Escobar JS; School of Public Health, University of Minnesota, Minneapolis, MN, USA.
  • Fettweis J; F. Widjaja Foundation Inflammatory Bowel and Immunobiology Research Institute, Cedars-Sinai Medical Center, Los Angeles, CA, USA.
  • Finn RD; Immunology Department, Weizmann Institute of Science, Rehovot, Israel.
  • Fodor AA; Microbiome and Cancer Division, Deutsches Krebsforschungszentrum, Heidelberg, Germany.
  • Forslund S; Vidarium-Nutrition, Health and Wellness Research Center, Grupo Empresarial Nutresa, Medellin, Colombia.
  • Franke A; Center for Microbiome Engineering and Data Analysis, Department of Microbiology and Immunology, Virginia Commonwealth University, Richmond, VA, USA.
  • Furlanello C; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, UK.
  • Gilbert J; Department of Bioinformatics and Genomics, University of North Carolina at Charlotte, Charlotte, NC, USA.
  • Grice E; Experimental and Clinical Research Center, Max Delbrück Center for Molecular Medicine and Charité University Hospital, Berlin, Germany.
  • Haibe-Kains B; Institute of Clinical Molecular Biology, Kiel University, Kiel, Germany.
  • Handley S; HK3 Lab, Rovereto, Italy.
  • Herd P; Department of Pediatrics and Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA.
  • Holmes S; Department of Dermatology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Jacobs JP; Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada.
  • Karstens L; Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA.
  • Knight R; McCourt School of Public Policy, Georgetown University, Washington, DC, USA.
  • Knights D; Department of Statistics, Stanford University, Stanford, CA, USA.
  • Koren O; Division of Digestive Diseases, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA.
  • Kwon DS; Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, OR, USA.
  • Langille M; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA.
  • Lindsay B; Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USA.
Nat Med ; 27(11): 1885-1892, 2021 11.
Article en En | MEDLINE | ID: mdl-34789871
ABSTRACT
The particularly interdisciplinary nature of human microbiome research makes the organization and reporting of results spanning epidemiology, biology, bioinformatics, translational medicine and statistics a challenge. Commonly used reporting guidelines for observational or genetic epidemiology studies lack key features specific to microbiome studies. Therefore, a multidisciplinary group of microbiome epidemiology researchers adapted guidelines for observational and genetic studies to culture-independent human microbiome studies, and also developed new reporting elements for laboratory, bioinformatics and statistical analyses tailored to microbiome studies. The resulting tool, called 'Strengthening The Organization and Reporting of Microbiome Studies' (STORMS), is composed of a 17-item checklist organized into six sections that correspond to the typical sections of a scientific publication, presented as an editable table for inclusion in supplementary materials. The STORMS checklist provides guidance for concise and complete reporting of microbiome studies that will facilitate manuscript preparation, peer review, and reader comprehension of publications and comparative analysis of published results.
Asunto(s)

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Proyectos de Investigación / Biología Computacional / Estudios Observacionales como Asunto / Disbiosis / Microbiota Tipo de estudio: Guideline / Observational_studies Límite: Humans Idioma: En Revista: Nat Med Asunto de la revista: BIOLOGIA MOLECULAR / MEDICINA Año: 2021 Tipo del documento: Article País de afiliación: Estados Unidos

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Proyectos de Investigación / Biología Computacional / Estudios Observacionales como Asunto / Disbiosis / Microbiota Tipo de estudio: Guideline / Observational_studies Límite: Humans Idioma: En Revista: Nat Med Asunto de la revista: BIOLOGIA MOLECULAR / MEDICINA Año: 2021 Tipo del documento: Article País de afiliación: Estados Unidos