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BIPS-A code base for designing and coding of a Phage ImmunoPrecipitation Oligo Library.
Leviatan, Sigal; Kalka, Iris N; Vogl, Thomas; Klompas, Shelley; Weinberger, Adina; Segal, Eran.
Afiliación
  • Leviatan S; Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.
  • Kalka IN; Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel.
  • Vogl T; Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.
  • Klompas S; Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel.
  • Weinberger A; Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.
  • Segal E; Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel.
PLoS Comput Biol ; 18(11): e1010663, 2022 11.
Article en En | MEDLINE | ID: mdl-36355866
BIPS (Build Phage ImmunoPrecipitation Sequencing library) is a software that converts a list of proteins into a custom DNA oligonucleotide library for the PhIP-Seq system. The tool creates constant-length oligonucleotides with internal barcodes, while maintaining the original length of the peptide. This allows using large libraries, of hundreds of thousands of oligonucleotides, while saving on the costs of sequencing and maintaining the accuracy of oligonucleotide reads identification. BIPS is available under GNU public license from: https://github.com/kalkairis/BuildPhIPSeqLibrary.
Asunto(s)

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Bacteriófagos Idioma: En Revista: PLoS Comput Biol Asunto de la revista: BIOLOGIA / INFORMATICA MEDICA Año: 2022 Tipo del documento: Article País de afiliación: Israel Pais de publicación: Estados Unidos

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Bacteriófagos Idioma: En Revista: PLoS Comput Biol Asunto de la revista: BIOLOGIA / INFORMATICA MEDICA Año: 2022 Tipo del documento: Article País de afiliación: Israel Pais de publicación: Estados Unidos