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Ten simple rules for using public biological data for your research.
Oza, Vishal H; Whitlock, Jordan H; Wilk, Elizabeth J; Uno-Antonison, Angelina; Wilk, Brandon; Gajapathy, Manavalan; Howton, Timothy C; Trull, Austyn; Ianov, Lara; Worthey, Elizabeth A; Lasseigne, Brittany N.
Afiliación
  • Oza VH; Department of Cell, Developmental and Integrative Biology, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
  • Whitlock JH; Department of Cell, Developmental and Integrative Biology, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
  • Wilk EJ; Department of Cell, Developmental and Integrative Biology, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
  • Uno-Antonison A; Center for Computational Genomics and Data Sciences, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
  • Wilk B; Department of Pediatrics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
  • Gajapathy M; Department of Pathology, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
  • Howton TC; Center for Computational Genomics and Data Sciences, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
  • Trull A; Department of Pediatrics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
  • Ianov L; Department of Pathology, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
  • Worthey EA; Center for Computational Genomics and Data Sciences, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
  • Lasseigne BN; Department of Pediatrics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
PLoS Comput Biol ; 19(1): e1010749, 2023 01.
Article en En | MEDLINE | ID: mdl-36602970
ABSTRACT
With an increasing amount of biological data available publicly, there is a need for a guide on how to successfully download and use this data. The 10 simple rules for using public biological data are (1) use public data purposefully in your research; (2) evaluate data for your use case; (3) check data reuse requirements and embargoes; (4) be aware of ethics for data reuse; (5) plan for data storage and compute requirements; (6) know what you are downloading; (7) download programmatically and verify integrity; (8) properly cite data; (9) make reprocessed data and models Findable, Accessible, Interoperable, and Reusable (FAIR) and share; and (10) make pipelines and code FAIR and share. These rules are intended as a guide for researchers wanting to make use of available data and to increase data reuse and reproducibility.
Asunto(s)

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Almacenamiento y Recuperación de la Información Tipo de estudio: Prognostic_studies Aspecto: Ethics Idioma: En Revista: PLoS Comput Biol Asunto de la revista: BIOLOGIA / INFORMATICA MEDICA Año: 2023 Tipo del documento: Article País de afiliación: Estados Unidos

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Asunto principal: Almacenamiento y Recuperación de la Información Tipo de estudio: Prognostic_studies Aspecto: Ethics Idioma: En Revista: PLoS Comput Biol Asunto de la revista: BIOLOGIA / INFORMATICA MEDICA Año: 2023 Tipo del documento: Article País de afiliación: Estados Unidos